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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaattttctcaagttactttctctctctctctctctcgttctagtcttaagtagtttcttgagaatctaacgctaaatgaaaaagcttttgaacagGCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGTTCACTGTACTGTGTCCGGTGTGTCAGATTATTTTGCTCAAG

Basic information

species Arabidopsis thaliana
transcript AT4G34030.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA07G33620.1 (Glycine max), 3'ss of exon 2
---------------------------------------------------------------gtcaattttctcaagttactttctctctctctct---ctctcgttcta-----gtcttaagtagtttcttgagaatctaacgctaaa--------tgaaaaagcttttgaacagGCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGTTCACTGTACTGTGTCCGGTGTGTCAGATTATTTTGCTCAAG
                                                                |  |||||   ||  |  ||  | |   | ||     | |    |||     || ||      |||  |  | || ||   | |||        | |  ||    ||  | ||||||| || ||||||||||| ||||| |||||||| ||||| || ||||| ||||| |    ||| ||||| || ||||||||||||||||
gtttgctctagctactcttgtactctaaaatactgtgtgataatctctggctatttctatgttcttgatttttaaaatctgtttcttttaaatttcaatattttaacactaacaatgtgtttgtgtattttctatgcatttataaccaaaattaaccttaattaaatgattttatagGCTGCCACTGGAGAAGAAGTCTCAGCAGAGGATTTGGGAGGTGCTACTGTGCACTGCAAGACGTCAGGTGTTTCTGATTATTTTGCTCAAG

upper sequence: AT4G34030.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv03s0063g00290.t01 (Vitis vinifera), 3'ss of exon 3
-gtcaattttctcaagttactttctctctctctctctctcgttctagtcttaagtagtttcttgagaatctaacgctaaatgaaaaagct-tttgaacagGCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGTTCACTGTACTGTGTCCGGTGTGTCAGATTATTTTGCTCAAG
 |     |||| ||    | | | | | | | | | |||   |  |    || | |  |   |    |  ||    ||  | ||  |    ||| |  |||||||||||||||||||||| || ||||||||||| ||||| || ||||| || || |     || || || |||||||||||||||||||
tgcatgctttcacatacaaatgtttttgtgtgtatatctatgtgcatatgtatggatctatgtatagacatagttatagctaaaggattggttttactagGCTGCTACAGGAGAAGAAGTCTCTGCTGAGGATTTGGGAGGTGCAACTGTGCATTGCAAAACATCAGGGGTTTCAGATTATTTTGCTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059294|gb|DR355051.1|DR355051
EST:     TGGTCAAAGGGAATGGTACCATATTTTTGGCAGGACCGCCACTTGTCAAG                         GCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGTT
genomic: TGGTCAAAGGGAATGGTACCATATTTTTAGCAGGACCGCCACTTGTCAAGgtcaattttc ... ttttgaacagGCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGTT
EST: gi|86088396|gb|DR384155.1|DR384155
EST:     GGTCAAGGGGAATGGTACCATA-TTTTGGCAGGACCGCCAC-TGTCAAAG                         GCTGCTACAGGAGAAGAAGTTNCAGCTGAGGATTTAGGAGGCGCCACTGT
genomic: GGTCAAAGGGAATGGTACCATATTTTTAGCAGGACCGCCACTTGTC-AAGgtcaattttc ... ttttgaacagGCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtcttaagtagtttcttgagaatctaacgctaaatgaaaaagcttttgaacagGCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGTTCACTGTACTGTGTCCGGTGTGTCAGATTATTTTGCTCAAG
                                            ctttt  CT-rich tract
                                taaatgaaaaa  TA-rich tract