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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcatattcccagtccagacatttgttttatttcatcaccataggcgtccctgtctttcatgtgatttactatatgttattatcatgttttcagTTGGATATTATGGACAAAGGTACTGATGCTCGAAAACTCCTTCTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTTGCCAGG

Basic information

species Arabidopsis thaliana
transcript AT4G33650.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33650.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA04G16340.1 (Glycine max), 3'ss of exon 3
-----gtgcatattcccagtc------cagacatttgt-tttatttcatcaccataggcgtccctgtctttcatgtgatttactatatgttattatcatgttttcagTTGGATATTATGGACAAAGGTACTGATGCTCGAAAACTCCTTCTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTTGCCAGG
     ||  ||  | | |         | ||||  | | ||| |   ||      ||  ||  |  | ||       || |     |  || | ||   |  |  |||||||||| ||||||| ||||||||||||||| || ||  | || ||||| ||| |||| || |||||||| || || || |||||||||||||||||||
gttcggtatattctactaacattttaactgacacgtatatttgtgaaattggttaagctgttgccatgttctg-acaatgttaggcac-ttgtaatttggaatgtagTTGGATATCATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTAGGTGTTGTAAATCGTTGCCAGG

upper sequence: AT4G33650.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA15G06380.1 (Glycine max), 3'ss of exon 3
-----gtgcatattcccag--tccagacatttgttttatttcatcaccataggc-gtccctgtctttcatgtgatttactatatgttattatcatgttttcagTTGGATATTATGGACAAAGGTACTGATGCTCGAAAACTCCTTCTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTTGCCAGG
     ||  ||  | | |   |    ||       ||  |  ||     || || ||  |  | ||         |||     | || ||||   |  |  |||||||||| ||||||| ||||||||||||||| || ||  | || ||||| ||| |||||||||||||||| || || || |||||||||||  | ||||
gttcggtatattcttctaacattttaactgacacatttatgaattttgttaagctgttgccatgttctgacaatgtta--ggctcttgttatttggaatgtagTTGGATATAATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCTCTTCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGG

upper sequence: AT4G33650.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA13G32940.1 (Glycine max), 3'ss of exon 3
gtgcatattcccagtccagacatttgttttatttcatcaccataggcgtccctgtctt----tcatgtgat----ttactatatgtt-attatcatgttttcagTTGGATATTATGGACAAAGGTACTGATGCTCGAAAACTCCTTCTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTTGCCAGG
||||    | |   || || |||||    |    |||     |     |   |    |     |||||  |    ||  ||    ||  ||||   |  |  |||||||||| ||||||| |||||||||||| || || ||  | || ||||| ||| ||||||| |||||||| || || || |||||||||||  | ||||
gtgcggtatactcttctag-cattttaactgacacatatttgtgaattttgttaagctgttgccatgttctgacattgttaggcatttgttatttggaatgtagTTGGATATAATGGACAGAGGTACTGATGCCCGGAATCTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataggcgtccctgtctttcatgtgatttactatatgttattatcatgttttcagTTGGATATTATGGACAAAGGTACTGATGCTCGAAAACTCCTTCTTGGAAATGTTGTTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTTGCCAGG
                                              tgttttc  CT-rich tract
                         atttactatatgttat  TA-rich tract