1 5' 3' | 2 5' 3' | 3 5' 3' |
...tagaatctttgtagtctcaatccaatgattttaagagcttgatcagtgtgaagtatagtgagattatgatgtataatctgttttcgatgtggatatatagGTACCATCTACGTTAGGACCGGTGATCTTCATGTCATGGCGGAGAAAGGATCTTGCGGAGCTGTGGGAAGGACCTGCATTATCTAATCCCATTGAGAAAT
species | Arabidopsis thaliana |
transcript | AT4G33410.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGTGTCTTGACCCACTCACCTCAGCCAGCTCTACTTTATCTG GTACCATCTACGTTAGGACCGGTGATCTTCATGTCATGGCGGAGAAAGGATEST: gi|164197156|gb|ES078741.1|ES078741
genomic: AGGTGTCTTGACCCACTCACCTCAGCCAGCTCTACTTTATCTGgtaatattct ... ggatatatagGTACCATCTACGTTAGGACCGGTGATCTTCATGTCATGGCGGAGAAAGGAT
EST: AGCTGCAGGTAGTCTTGACCCACTCACCTCAGCCAGCTCTACTTTATCTG GTACCATCTACGEST: gi|86085811|gb|DR381570.1|DR381570
genomic: AGCTGCAGGT-GTCTTGACCCACTCACCTCAGCCAGCTCTACTTTATCTGgtaatattct ... ggatatatagGTACCATCTACG
EST: TAGCTGCAGGTGTCTTGACCCACTCACCTCAGCCAGCTCTACTTTATCTG GTACCATCTACGTTAGGACCGGTGATCTTCATGTCATGGCGGAGAAAGGAT
genomic: TAGCTGCAGGTGTCTTGACCCACTCACCTCAGCCAGCTCTACTTTATCTGgtaatattct ... ggatatatagGTACCATCTACGTTAGGACCGGTGATCTTCATGTCATGGCGGAGAAAGGAT
gtgtgaagtatagtgagattatgatgtataatctgttttcgatgtggatatatagGTACCATCTACGTTAGGACCGGTGATCTTCATGTCATGGCGGAGAAAGGATCTTGCGGAGCTGTGGGAAGGACCTGCATTATCTAATCCCATTGAGAAAT
attatgatgtataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagaatctttgtagtctcaatccaatgattttaagagcttgatcagtgtgaagtatagtgagattatgatgtataatctgttttcgatgtggatatatagGTACCATCTACGTTAGGACCGGTGATCTTCATGTCATGGCGGAGAAAGGATCTTGCGGAGCTGTGGGAAGGACCTGCATTATCTAATCCCATTGAGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - aatccaa