1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaataagattttctagttgttaattcatgttttgataacaattgttttttcttttcttaattctaatggttttgaaacattgtgacacaaaaatttcagCGGTAAGCGGAAGAGGATTCTTAGCAAGAGATATAACGTTCCAGAACACAGCAGGGCCAGAGAAGCATCAGGCGGTAGCACTGAGATCAGACTCTGACCT
species | Arabidopsis thaliana |
transcript | AT4G33220.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCACTTTCCGATCAGCTACATTCG CGGTAAGCGGAAGAGGATTCTTAGCAAGAGATATAACGTTCCAGAACACAGEST: gi|125282439|gb|EL296524.1|EL296524
genomic: ACCACTTTCCGATCAGCTACATTCGgtaataagat ... aaaatttcagCGGTAAGCGGAAGAGGATTCTTAGCAAGAGATATAACGTTCCAGAACACAG
EST: TAACCGCAGCTTCATCGATGGTTGGACCACTTTCCGATCAGCTACATTCG CGGTAAGCGGAAGAGGATTCTTAGCAAGAGATATAACGTTEST: gi|124932291|gb|EL009563.1|EL009563
genomic: TAACCGCAGCTTCATCGATGGTTGGACCACTTTCCGATCAGCTACATTCGgtaataagat ... aaaatttcagCGGTAAGCGGAAGAGGATTCTTAGCAAGAGATATAACGTT
EST: CGATGGTTGGACCACTTTCCGATCAGCTACATTCG CGGTAAGCGGAAGAGGATTCTTAGCAAGAGATATAACGTTCCAGAACACAGEST: gi|124913599|gb|EH987473.1|EH987473
genomic: CGATGGTTGGACCACTTTCCGATCAGCTACATTCGgtaataagat ... aaaatttcagCGGTAAGCGGAAGAGGATTCTTAGCAAGAGATATAACGTTCCAGAACACAG
EST: CTTCATCGATGGTTGGACCACTTTCCGATCAGCTACATTCG CGGTAAGCGGAAGAGGATTCTTAGCAAGAGATATAACGTTCCAGAACACAG
genomic: CTTCATCGATGGTTGGACCACTTTCCGATCAGCTACATTCGgtaataagat ... aaaatttcagCGGTAAGCGGAAGAGGATTCTTAGCAAGAGATATAACGTTCCAGAACACAG
ttttttcttttcttaattctaatggttttgaaacattgtgacacaaaaatttcagCGGTAAGCGGAAGAGGATTCTTAGCAAGAGATATAACGTTCCAGAACACAGCAGGGCCAGAGAAGCATCAGGCGGTAGCACTGAGATCAGACTCTGACCT
ttctaat putative branch site (score: 2)
ttttcttaattctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataagattttctagttgttaattcatgttttgataacaattgttttttcttttcttaattctaatggttttgaaacattgtgacacaaaaatttcagCGGTAAGCGGAAGAGGATTCTTAGCAAGAGATATAACGTTCCAGAACACAGCAGGGCCAGAGAAGCATCAGGCGGTAGCACTGAGATCAGACTCTGACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA