Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatagattaatttatttgattcattcacattaattagttgacacataagttaaggaattgaaatagtctgtcgctctcagCAGGGGAATTTGGCTACCACAGATACTAGCTGTGAGTCAGTGGTGACGAGTGGTCAACACCACTTGACCCCTCAACATCAGCCTCGTGATGCTAGTCCTG

Basic information

species Arabidopsis thaliana
transcript AT4G32880.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32880.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA06G09100.1 (Glycine max), 3'ss of exon 2
----------------------------------------------------------------------------------------------------------gtagatagattaatttatttgattcattcacattaattagt--tgacacataagttaaggaattgaaatagtctgtcgc------tctcagCAGGGGAATTTGGCTAC------CACAGATACTAGCTGTGAGTCAGTGGTGACGAGTGGTCAACACCACTTGACCCCTCAACATCAGCCTC---GTGATGCTAGTCCTG
                                                                                                           || ||  || ||     ||     |   | | | | || |  | || ||||| |   | |||     || |   ||        | | | ||||  |   | || ||      |||| | || ||||||||||| ||||||||||||||||| |   ||||||| || || || || || |   | |||||||      
gtaataataatactatactatacttaacaatcttcctttaattctttctttcattgcatactattttaacttctcttatgattcctagttttgtttggttaaattaatatatcaatcaagaggcttatgcaaacaaaaatgaatactcattactcataactattgcaatgattttatttcatcatgtgatgtatgaacagGCTACGCTTGCCACAACAGACACAAACACAAGCTGTGAGTCGGTGGTGACGAGTGGTCAGCGGAACTTGACACCGCAGCAGCATCCACCGAGGGATGCTA------

upper sequence: AT4G32880.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv04s0008g03250.t01 (Vitis vinifera), 3'ss of exon 2
------------gtagatagattaatttatttgattca--ttcacattaattagttgacacataagttaaggaattgaaatagtctgtcgctctcagCAGGGGAATTTGGCTACCACAGATACTAGCTGTGAGTCAGTGGTGACGAGTGGTCAACACCACTTGACCCCTCAACATCAGCCTCGTGATGCTAGTCCTG---
             | || |    | |  ||      ||  ||  | || |||   |   |  | |  || ||  |   |      || |       ||||| ||   | || |||||||| || || ||||| || |||||||| |||||||||||||| ||||| ||||| ||||  ||  | ||||| |||||||   
ttctcagcgtccatggacaacaaattgcataaaccccacctttcctttgatttcatattatcttatgtatgggttctgagcctattgccttgtcttgcagGCGACCCTTGCCACCACAGACACCAGTTGTGAATCGGTGGTGACAAGTGGTCAACACCATTTGACTCCTCAGCATCCACCAAGGGATGCCAGTCCTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacattaattagttgacacataagttaaggaattgaaatagtctgtcgctctcagCAGGGGAATTTGGCTACCACAGATACTAGCTGTGAGTCAGTGGTGACGAGTGGTCAACACCACTTGACCCCTCAACATCAGCCTCGTGATGCTAGTCCTG
                                             tcgctctc  CT-rich tract
                              aattgaaata  TA-rich tract