1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatcatccctcacaatttgcttctaggtttcttcgctttagcttatgcatatttggatgtgatcttctttctggctgatgattattgttgatctcttctttttccttcagCAAGGGAAGCATGACTCTGCACCTGCTGAAAGCGCTGATGG
species | Arabidopsis thaliana |
transcript | AT4G32330.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCCTCTTAAGAGCAAATCATTCAATGGGCGAGAGGCACAAGTCACAAAG CAAGGGAAGCATGACTCTGCACCTGCTGAAAGCGCTEST: gi|164123251|gb|ES088818.1|ES088818
genomic: ATCCTCTTAAGAGCAAATCATTCAATGGGCGAGAGGCACAAGTCACAAAGgtaatcatcc ... tttccttcagCAAGGGAAGCATGACTCTGCACCTGCTGAAAGCGCT
EST: CCTCTTAAGAGCAAATCATTCAATGGGCGAGAGGCACAAGTCACAAAG CAAGGGAAGCATGACTCTGCACCTGCTGAAAGCGCTGATGGEST: gi|164164288|gb|ES049853.1|ES049853
genomic: CCTCTTAAGAGCAAATCATTCAATGGGCGAGAGGCACAAGTCACAAAGgtaatcatcc ... tttccttcagCAAGGGAAGCATGACTCTGCACCTGCTGAAAGCGCTGATGG
EST: TCCTCTTAAGAGCAAATCATTCAATGGGGCGAGAGGCACAAGTCACAAAG CAAGGGAAGCATGACTCEST: gi|164081903|gb|ES028118.1|ES028118
genomic: TCCTCTTAAGAGCAAATCATTCAATGGG-CGAGAGGCACAAGTCACAAAGgtaatcatcc ... tttccttcagCAAGGGAAGCATGACTC
EST: CCTCTTAAGAGCAAATCATTCAATGGGCGAGAGGCACAAGTCACTAAAG CAAGGGAAGCATGACTCTGCACCTGCTGAAAGCGCTGATGG
genomic: CCTCTTAAGAGCAAATCATTCAATGGGCGAGAGGCACAAGTCAC-AAAGgtaatcatcc ... tttccttcagCAAGGGAAGCATGACTCTGCACCTGCTGAAAGCGCTGATGG
gatgtgatcttctttctggctgatgattattgttgatctcttctttttccttcagCAAGGGAAGCATGACTCTGCACCTGCTGAAAGCGCTGATGG
tgttgat putative branch site (score: 4)
ttattgttgatctctt CT-rich tract
atgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcatccctcacaatttgcttctaggtttcttcgctttagcttatgcatatttggatgtgatcttctttctggctgatgattattgttgatctcttctttttccttcagCAAGGGAAGCATGACTCTGCACCTGCTGAAAGCGCTGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT