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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgaatttcttactcaataagatgtttttttgttctgcatatactaacacacaatgtaactgttttatagAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACAGGCAAAGAGTCAAGGCTATCTTAAAAAACAGAAAAGTGTCTCTTCTTCAGGGAAG

Basic information

species Arabidopsis thaliana
transcript AT4G32120.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878363|gb|AU239194.1|AU239194
EST:     AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA                         AGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACAGGCAAA
genomic: AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAAgtaagctgaa ... tgttttatagAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACAGGCAAA
EST: gi|164071111|gb|EL977202.1|EL977202
EST:     AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA                         AGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCAC
genomic: AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAAgtaagctgaa ... tgttttatagAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCAC
EST: gi|164133040|gb|EL981447.1|EL981447
EST:     AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA                         AGATCTTAGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCAC
genomic: AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAAgtaagctgaa ... tgttttatagAGATCTT-GAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCAC
EST: gi|86064342|gb|DR360099.1|DR360099
EST:     AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA                         AGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACAGGCAAA
genomic: AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAAgtaagctgaa ... tgttttatagAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACAGGCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataagatgtttttttgttctgcatatactaacacacaatgtaactgttttatagAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACAGGCAAAGAGTCAAGGCTATCTTAAAAAACAGAAAAGTGTCTCTTCTTCAGGGAAG
                                            ctgtttt  CT-rich tract
      atgttttttt  TA-rich tract