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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgttgattttctttgtctcttgtgaactttaatttcgtttttttttccttaggatgcaatgatatcttatctttagatgtcaatatcaaatgtccttaactattcattcatttacggattttgattactttataacagttggtatcttcttctatatatcgtcatcttatatgtttttatttgtatatagTCTTTCACAGAAGGAGCGTATTGAGTTTCTCGACAATATATTTGACATCTTCTTCTGCCTTTTCTG

Basic information

species Arabidopsis thaliana
transcript AT4G32010.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875090|gb|AU235921.1|AU235921
EST:     TGGAAGTGACTCGTGGGTTTCTCTTTTTTGGACAAGTTTCTTTCNNAAAG                         TCTTTCACAGAAGGAGCGTATTTGAGTTTCTCGACAATNTATTTG
genomic: TGGAAGTGACTCGTGG-TTTCTCTTTTTTGGACAAGTTTCTT-CG-AAAGgtctgttgat ... ttgtatatagTCTTTCACAGAAGGAGCGTATT-GAGTTTCTCGACAATATATTTG
EST: gi|116432611|gb|EG475203.1|EG475203
EST:     AGATGGAAGTGACTCGTGGTTTCTCTTTTTTGGACAAGTTTCTTCGAAAG                         TCTTTCACAGAAGGAGCGTATTGAGTTTCTCGACAATATATTTGACATCTT
genomic: AGATGGAAGTGACTCGTGGTTTCTCTTTTTTGGACAAGTTTCTTCGAAAGgtctgttgat ... ttgtatatagTCTTTCACAGAAGGAGCGTATTGAGTTTCTCGACAATATATTTGACATCTT
EST: gi|116472023|gb|EG514615.1|EG514615
EST:     AGATGGAAGTGACTCGTGGTTTCTCTTTTTTGGACAAGTTTCTTCGAAAG                         TCTTTCACAGAAGGAGCGTATTGAGTTTCTCGACAATATATTTGACATCTT
genomic: AGATGGAAGTGACTCGTGGTTTCTCTTTTTTGGACAAGTTTCTTCGAAAGgtctgttgat ... ttgtatatagTCTTTCACAGAAGGAGCGTATTGAGTTTCTCGACAATATATTTGACATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttggtatcttcttctatatatcgtcatcttatatgtttttatttgtatatagTCTTTCACAGAAGGAGCGTATTGAGTTTCTCGACAATATATTTGACATCTTCTTCTGCCTTTTCTG
                                      tttttattt  CT-rich tract
                          tcatcttatatgtttt  TA-rich tract