1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtactctcttttctttgttagtgctcgaatctgaaccatatgaacaattttgaatgacgttttagagtgttattagtctaataagtgtagtttgtatctgaaatttgtggattttggtttcagTCTTTTAGCAGAGTGACTATGACGGTTGCAGTGAAGCCTTCTCGTTTCGAGGGTATAACTATGGCTCCACCAGACCCTATTCTTGGAGTCAGTGAAGCAT
species | Arabidopsis thaliana |
transcript | AT4G31990.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATAAGCTAAAGCTTGGAACTTCTGCTTCGAACCCGTTCCTAAAAGCAAAG TCTTTTAGCAGAGTGACTATGACGGTTGCAGTGAAGCCTTCTCGTTTCGAGEST: gi|124812167|gb|EH897033.1|EH897033
genomic: ATAAGCTAAAGCTTGGAACTTCTGCTTCGAACCCGTTCCTAAAAGCAAAGgtactctctt ... ttggtttcagTCTTTTAGCAGAGTGACTATGACGGTTGCAGTGAAGCCTTCTCGTTTCGAG
EST: TAAGCTAAAGCTTGGAACTTCTGCTTCGAACCCGTTCCTAAAAGCAAAG TCTTTTAGCAGAGTGACTATGACGGTTGCAGTGAAGCCTTCTCGTTTCGAG
genomic: TAAGCTAAAGCTTGGAACTTCTGCTTCGAACCCGTTCCTAAAAGCAAAGgtactctctt ... ttggtttcagTCTTTTAGCAGAGTGACTATGACGGTTGCAGTGAAGCCTTCTCGTTTCGAG
gttattagtctaataagtgtagtttgtatctgaaatttgtggattttggtttcagTCTTTTAGCAGAGTGACTATGACGGTTGCAGTGAAGCCTTCTCGTTTCGAGGGTATAACTATGGCTCCACCAGACCCTATTCTTGGAGTCAGTGAAGCAT
gtctaat putative branch site (score: 3)
tctaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactctcttttctttgttagtgctcgaatctgaaccatatgaacaattttgaatgacgttttagagtgttattagtctaataagtgtagtttgtatctgaaatttgtggattttggtttcagTCTTTTAGCAGAGTGACTATGACGGTTGCAGTGAAGCCTTCTCGTTTCGAGGGTATAACTATGGCTCCACCAGACCCTATTCTTGGAGTCAGTGAAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC