1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcaaccacattgagatagtagtagcattgttaactctgataagtttttcagttttattgatcccactaaataacaaacctaatgttatgtataatttcagGGAACATCCTCTGTCGTTAATTATGATTCTTGTTTGGCTAGTTTGATAGCCAAGACAAATGTCTTTGTTGTGGAAGGCTATTTGTTTGAGCTTCCTGATA
species | Arabidopsis thaliana |
transcript | AT4G27600.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACTCCTGATGCACAACGTACTATGCTTGCATATCAG GGAACATCCTCTGTCGTTAATTATGATTCTTGTTTGGCTAGTTTGATAGCEST: gi|125260977|gb|EL275062.1|EL275062
genomic: AACTCCTGATGCACAACGTACTATGCTTGCATATCAGgtaggatttc ... ataatttcagGGAACATCCTCTGTCGTTAATTATGATTCTTGTTTGGCTAGTTTGATAGC
EST: TGATAGTTCTCACAACTCCTGATGCACAACGTACTATGCTTGCATATCAG GGAACATCCTCTGTCGTTAATTATGATEST: gi|124773747|gb|EH863876.1|EH863876
genomic: TGATAGTTCTCACAACTCCTGATGCACAACGTACTATGCTTGCATATCAGgtaggatttc ... ataatttcagGGAACATCCTCTGTCGTTAATTATGAT
EST: AACGTACTATGCTTGCATATCAG GGAACATCCTCTGTCGTTAATTATGATTCTTGTTTGGCTAGTTTGATAGCC
genomic: AACGTACTATGCTTGCATATCAGgtaggatttc ... ataatttcagGGAACATCCTCTGTCGTTAATTATGATTCTTGTTTGGCTAGTTTGATAGCC
tttcagttttattgatcccactaaataacaaacctaatgttatgtataatttcagGGAACATCCTCTGTCGTTAATTATGATTCTTGTTTGGCTAGTTTGATAGCCAAGACAAATGTCTTTGTTGTGGAAGGCTATTTGTTTGAGCTTCCTGATA
taatgttatgtataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaccacattgagatagtagtagcattgttaactctgataagtttttcagttttattgatcccactaaataacaaacctaatgttatgtataatttcagGGAACATCCTCTGTCGTTAATTATGATTCTTGTTTGGCTAGTTTGATAGCCAAGACAAATGTCTTTGTTGTGGAAGGCTATTTGTTTGAGCTTCCTGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- aaccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaacct