1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattgatcctaaacccaatttcattgttttctctcgaatcagatttgattgaatttgggcttttaattctctatacatcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGATGAAAGAACAGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTC
species | Arabidopsis thaliana |
transcript | AT4G27040.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGGGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404457|gb|EG447049.1|EG447049
genomic: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404471|gb|EG447063.1|EG447063
genomic: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404489|gb|EG447081.1|EG447081
genomic: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404468|gb|EG447060.1|EG447060
genomic: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404480|gb|EG447072.1|EG447072
genomic: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: AGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404481|gb|EG447073.1|EG447073
genomic: AGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404466|gb|EG447058.1|EG447058
genomic: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404478|gb|EG447070.1|EG447070
genomic: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: AATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404474|gb|EG447066.1|EG447066
genomic: AATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: AGGAATTGGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404418|gb|EG447010.1|EG447010
genomic: AGGAATT-GGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: TGCGACGACGACCAGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATAEST: gi|116404364|gb|EG446956.1|EG446956
genomic: TGCGACGACGACCAGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATA
EST: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404356|gb|EG446948.1|EG446948
genomic: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404487|gb|EG447079.1|EG447079
genomic: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: AATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404417|gb|EG447009.1|EG447009
genomic: AATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: TGCGACGACGACCAGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATAEST: gi|116404482|gb|EG447074.1|EG447074
genomic: TGCGACGACGACCAGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATA
EST: GAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTATCTAGGAGAAAATGTAGCCAAGTTACGGACTGATATEST: gi|116404362|gb|EG446954.1|EG446954
genomic: GAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTA-CTAGGAGAAAATGTAGCCAAGTTACGGACTGATAT
EST: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404459|gb|EG447051.1|EG447051
genomic: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: GGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404461|gb|EG447053.1|EG447053
genomic: GGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404472|gb|EG447064.1|EG447064
genomic: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: AGGAATTGGAGGATTACAATAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404455|gb|EG447047.1|EG447047
genomic: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGEST: gi|116404396|gb|EG446988.1|EG446988
genomic: AGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATG
EST: TGCGACGACGACCAGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGG GATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATA
genomic: TGCGACGACGACCAGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGgtattgatcc ... tcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATA
ctcgaatcagatttgattgaatttgggcttttaattctctatacatcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGATGAAAGAACAGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTC
ttttaat putative branch site (score: 3)
ttttaattctctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgatcctaaacccaatttcattgttttctctcgaatcagatttgattgaatttgggcttttaattctctatacatcaaaaacagGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGATGAAAGAACAGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA