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gtttgtagcatattttttctgtacttctacactgaaaacccctccaggcctctaagactggtacagattaagtcagcatatgctaacttgtatttttttgcccagGACTTCACTGGAGTACCAGTTCTAGTTGATCTTGCTTCTATGAGGGATGCAGTGAAGAATCTTGGTAGTGATCCTAGCAAGATCAACCCCTTG
species | Arabidopsis thaliana |
transcript | AT4G26970.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTACTAAGCAGGTTGAAATTGCCTTCAAGCCAGCCCGTGTTATCTTACAG GACTTCACTGGAGTACCAGTTCTAGTTGATCTTGCTTCTATGAGGGATGCAEST: gi|116380644|gb|EG423236.1|EG423236
genomic: CTACTAAGCAGGTTGAAATTGCCTTCAAGCCAGCCCGTGTTATCTTACAGgtttgtagca ... ttttgcccagGACTTCACTGGAGTACCAGTTCTAGTTGATCTTGCTTCTATGAGGGATGCA
EST: CTACTAAGCAGGTTGAAATTGCCTTCAAGCCAGCCCGTGTTATCTTACAG GACTTCACTGGAGTACCAGTTCTAGTTGATCTTGCTTCTATGAGGGATGCAEST: gi|116431682|gb|EG474274.1|EG474274
genomic: CTACTAAGCAGGTTGAAATTGCCTTCAAGCCAGCCCGTGTTATCTTACAGgtttgtagca ... ttttgcccagGACTTCACTGGAGTACCAGTTCTAGTTGATCTTGCTTCTATGAGGGATGCA
EST: CTACTAAGCAGGTTGAAATTGCCTTCAAGCCAGCCCGTGTTATCTTACAG GACTTCACTGGAGTACCAGTTCTAGTTGATCTTGCTTCTATGAGGGATGCAEST: gi|116431683|gb|EG474275.1|EG474275
genomic: CTACTAAGCAGGTTGAAATTGCCTTCAAGCCAGCCCGTGTTATCTTACAGgtttgtagca ... ttttgcccagGACTTCACTGGAGTACCAGTTCTAGTTGATCTTGCTTCTATGAGGGATGCA
EST: CTACTAAGCAGGTTGAAATTGCCTTCAAGCCAGCCCGTGTTATCTTACAG GACTTCACTGGAGTACCAGTTCTAGTTGATCTTGCTTCTATGAGGGATGCAEST: gi|116431681|gb|EG474273.1|EG474273
genomic: CTACTAAGCAGGTTGAAATTGCCTTCAAGCCAGCCCGTGTTATCTTACAGgtttgtagca ... ttttgcccagGACTTCACTGGAGTACCAGTTCTAGTTGATCTTGCTTCTATGAGGGATGCA
EST: CTACTAAGCAGGTTGAAATTGCCTTCAAGCCAGCCCGTGTTATCTTACAG GACTTCACTGGAGTACCAGTTCTAGTTGATCTTGCTTCTATGAGGGATGCAEST: gi|116380645|gb|EG423237.1|EG423237
genomic: CTACTAAGCAGGTTGAAATTGCCTTCAAGCCAGCCCGTGTTATCTTACAGgtttgtagca ... ttttgcccagGACTTCACTGGAGTACCAGTTCTAGTTGATCTTGCTTCTATGAGGGATGCA
EST: CTACTAAGCAGGTTGAAATTGCCTTCAAGCCAGCCCGTGTTATCTTACAG GACTTCACTGGAGTACCAGTTCTAGTTGATCTTGCTTCTATGAGGGATGCA
genomic: CTACTAAGCAGGTTGAAATTGCCTTCAAGCCAGCCCGTGTTATCTTACAGgtttgtagca ... ttttgcccagGACTTCACTGGAGTACCAGTTCTAGTTGATCTTGCTTCTATGAGGGATGCA
tctaagactggtacagattaagtcagcatatgctaacttgtatttttttgcccagGACTTCACTGGAGTACCAGTTCTAGTTGATCTTGCTTCTATGAGGGATGCAGTGAAGAATCTTGGTAGTGATCCTAGCAAGATCAACCCCTTG
tgctaac putative branch site (score: 1)
tttttttgccc putative PPT
taacttgtattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtagcatattttttctgtacttctacactgaaaacccctccaggcctctaagactggtacagattaagtcagcatatgctaacttgtatttttttgcccagGACTTCACTGGAGTACCAGTTCTAGTTGATCTTGCTTCTATGAGGGATGCAGTGAAGAATCTTGGTAGTGATCCTAGCAAGATCAACCCCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA