1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatcaatatttattttttctttgtcatttttctaaagacatctgtgttaaattttaaaatctattatttgattcatatttgtggattagGTGACAATAGATATTGCTAGCCCAGCAAGTGGTGTAATCCAAGAG
species | Arabidopsis thaliana |
transcript | AT4G26910.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAGAGAGTCCAGGCTGATTGAGGCTATTGCACAAATTGAAACTGATAAG GTGACAATAGATATTGCTAGCCCAGCAAGTGGTGTAAEST: gi|163988875|gb|ES029168.1|ES029168
genomic: TGAGAGAGTCCAGGCTGA-TGAGGCTATTGCACAAATTGAAACTGATAAGgtatcaatat ... tgtggattagGTGACAATAGATATTGCTAGCCCAGCAAGTGGTGTAA
EST: GTGAGAGAGTCCAGGCTGATGAGGCTATTGCACAAATTGAAACTGATAAG GTGACAATAGATATTGCTAGCCCAGC
genomic: GTGAGAGAGTCCAGGCTGATGAGGCTATTGCACAAATTGAAACTGATAAGgtatcaatat ... tgtggattagGTGACAATAGATATTGCTAGCCCAGC
aagacatctgtgttaaattttaaaatctattatttgattcatatttgtggattagGTGACAATAGATATTGCTAGCCCAGCAAGTGGTGTAATCCAAGAG
tgtgttaaattttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcaatatttattttttctttgtcatttttctaaagacatctgtgttaaattttaaaatctattatttgattcatatttgtggattagGTGACAATAGATATTGCTAGCCCAGCAAGTGGTGTAATCCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG