Sequence
atgc intronic sequence ATGC exonic sequencegtaagtaatctcacgtcttacaagtggtaaagagatgagatggttacagtgtagtgtgattcaatgtctttgtttccattgcagCCTGATAAGACTTCAGGAACGATCAAAGAACAACTTTCTGCAATAGCACCTGCGCTTGAACAACTTTGGCAACAGAAAGAGGAAAGGGTCCGGGCATTTT
Basic information
species | Arabidopsis thaliana |
transcript | AT4G26760.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G26760.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA02G46450.1 (Glycine max), 3'ss of exon 3
---------------------------------------------gtaagtaatctcacg-tcttacaa-gtggtaaag--agatgagatggttacagtgtagtgtgat-tcaatgtctttgtttccattgcagCCTGATAAGACTTCAGGAACGATCAAAGAACAACTTTCTGCAATAGCACCTGCGCTTGAACAACTTTGGCAACAGAAAGAGGAAAGGGTCCGGGCATTTT
| | || | | | |||| ||| | | | || | || || || | | | | || | || ||| | |||||||| || ||||| ||||| ||||||||||| ||| | || |||||||| | |||||||| | |||||||| ||||| ||||| | || || |
gttagtaactattttgactatgtattatattggcaataatacactacgcattagctaaagattttactctgtgatgcatttaaatagtaaagtagcaaactaatttcctatgcatattgtttattctttcacagCCTGAGAATACTTCTGGAACTATCAAAGAACAGCTTGCAGCTATAGCACCAGTACTTGAACAGTTATGGCAACAAAAAGAAGAAAGAATTAAGGAGTTCT
upper sequence: AT4G26760.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA18G10090.1 (Glycine max), 3'ss of exon 3
--------------------------------------gtaagtaatctcacgtcttacaa-gtggt--aaagagatgagatggttacagtgtagtgtgat-tcaatgtctttgtttccattgcagCCTGATAAGACTTCAGGAACGATCAAAGAACAACTTTCTGCAATAGCACCTGCGCTTGAACAACTTTGGCAACAGAAAGAGGAAAGGGTCCGGGCATTTT
| ||| | | | ||| ||| | | | | || ||| | || | | | | || | |||| || | || |||||||| ||||||| ||| || || || ||||||||| | ||||||||||| | | |||||| | |||||||| ||||||||||| | || ||||
gtcagtaactaattatatatgtcctgaatttggctactaccaataaccgctgataaaacattgtgatgcatataaatactgaacttagaaactaatttcctatgcatatttttggtttcttttcagCCTGACAAGACTTTAGGCACTATTAAGGAACAACTTGCAGCAATAGCACCAACAATGGAACAATTATGGCAACAAAAAGAGGAAAGAATAAAGGAGTTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagagatgagatggttacagtgtagtgtgattcaatgtctttgtttccattgcagCCTGATAAGACTTCAGGAACGATCAAAGAACAACTTTCTGCAATAGCACCTGCGCTTGAACAACTTTGGCAACAGAAAGAGGAAAGGGTCCGGGCATTTT
tctttgtttccatt CT-rich tract
attcaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtaatctcacgtcttacaagtggtaaagagatgagatggttacagtgtagtgtgattcaatgtctttgtttccattgcagCCTGATAAGACTTCAGGAACGATCAAAGAACAACTTTCTGCAATAGCACCTGCGCTTGAACAACTTTGGCAACAGAAAGAGGAAAGGGTCCGGGCATTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA