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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccgcaaaatacttttatcgatctcctatgctcggtttgatatttcgttttagattttgattggttattcaatggttttaaagctatttttgtgtgatgaatagAAATGGACAATGGGAATGCCAAAGCTGGAACCAACATTCGAGACGCTTGTTGACACATTTGTGTTCCTAGACGAGAACAAGGACGGATATGTTAGCCGCG

Basic information

species Arabidopsis thaliana
transcript AT4G26470.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26470.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA16G16060.1 (Glycine max), 3'ss of exon 4
gtacccgcaaaatacttttatcgatctcctatgctcggtttgata---tttcgttttagattttgattggttattcaatggttttaaagctatttttgtgtgatgaatagAAATGGACAATGGGAATGCCAAAGCTGGAACCAACATTCGAGACGCTTGTTGACACATTTGTGTTCCTAGACGAGAACAAGGACGGATATGTTAGCCGCG
         |   |    ||    | |   |||||   |||||||    |     ||  ||||  ||  ||| | | |    || |||    |||   ||   |   |||||||    ||| || |||||||||||||| |  ||||| |||||  | ||||| |||||||| ||||||||| |||||||||| |||||||| |||    
--------cagggaagcctagaattttgtcatgcttcctttgataacaataaaccttgaatttccat--gttttgctacatcttcaaattgttttccatgacttccctagAAATCACGAATTGGGATGCCAAAGCTGGAGCGCACATTTGAGACTTTGGTTGATACATTTGTATTCCTAGACAAGAACAAGGATGGATATGTCAGCAAAA

upper sequence: AT4G26470.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G33830.2 (Glycine max), 3'ss of exon 3
gtacccgcaaaatacttttatcgatctcctatgctcggtttgata---tttcgttttagattttgattggttattcaatggttttaaagctatttttgtgtgatgaatagAAATGGACAATGGGAATGCCAAAGCTGGAACCAACATTCGAGACGCTTGTTGACACATTTGTGTTCCTAGACGAGAACAAGGACGGATATGTTAGCCGCG
       ||    |   | |    |     ||||| |  ||||||    |     ||  ||||  ||  ||| | | |    || |||  | |||   ||   |   |||||||    ||| || ||||||||||||||    ||||| |||||  | ||||| |||||||| ||| ||||| |||||||||| |||||||| |||    
-------cagggcagcct-agaatttcatcatgcttgcattgataacaataaaccttgaatttccat--gttttgctacatcttcaaatttttttccatgacttccctagAAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTTGATACATTTGTATTCTTAGACAAGAACAAGGATGGATATGTCAGCAAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagattttgattggttattcaatggttttaaagctatttttgtgtgatgaatagAAATGGACAATGGGAATGCCAAAGCTGGAACCAACATTCGAGACGCTTGTTGACACATTTGTGTTCCTAGACGAGAACAAGGACGGATATGTTAGCCGCG
     ttttgat  putative branch site (score: 4)
                          ttttaaagctattttt  TA-rich tract