1 5' 3' | 2 5' 3' | 3 5' 3' |
gttactttgcttgctgaaaattctcatcatgactatccaatttcaaaccgcctgatttgaattttgttgcagTCACATCACAAACCAAGAGAAGGACCGTTTGAGCTAAACGATGTTTTTGCTATAGTGAACGCTGGTCCAGCGATTGGTCTCCTCTCTTATGGATTCTTCA
species | Arabidopsis thaliana |
transcript | AT4G25700.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGGGCTCATAGAGCTCTGTGGCACGCTTCTCTATGGAATATGCATGAG TCACATCACAAACCAAGAGAAGGACCGTTTGAGCTAAATGATGTTTTTGCTEST: gi|125084358|gb|EL144592.1|EL144592
genomic: GATGGGCTCATAGAGCTCTGTGGCACGCTTCTCTATGGAATATGCATGAGgttactttgc ... tttgttgcagTCACATCACAAACCAAGAGAAGGACCGTTTGAGCTAAACGATGTTTTTGCT
EST: GATGGGCTCATAGAGCTCTGTGGCACGCTTCTCTATGGAATATGCATGAG TCACATCACAAACCAAGAGAAGGACCGTTTGAGEST: gi|125287548|gb|EL301633.1|EL301633
genomic: GATGGGCTCATAGAGCTCTGTGGCACGCTTCTCTATGGAATATGCATGAGgttactttgc ... tttgttgcagTCACATCACAAACCAAGAGAAGGACCGTTTGAG
EST: TGGCACGCTTCTCTATGGAATATGCATGAG TCACATCACAAACCAAGAGAAGGACCGTTTGAGCTAAACGATGTTTTTGCT
genomic: TGGCACGCTTCTCTATGGAATATGCATGAGgttactttgc ... tttgttgcagTCACATCACAAACCAAGAGAAGGACCGTTTGAGCTAAACGATGTTTTTGCT
aaattctcatcatgactatccaatttcaaaccgcctgatttgaattttgttgcagTCACATCACAAACCAAGAGAAGGACCGTTTGAGCTAAACGATGTTTTTGCTATAGTGAACGCTGGTCCAGCGATTGGTCTCCTCTCTTATGGATTCTTCA
gcctgat putative branch site (score: 4)
ttttgtt putative PPT
atttgaattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttactttgcttgctgaaaattctcatcatgactatccaatttcaaaccgcctgatttgaattttgttgcagTCACATCACAAACCAAGAGAAGGACCGTTTGAGCTAAACGATGTTTTTGCTATAGTGAACGCTGGTCCAGCGATTGGTCTCCTCTCTTATGGATTCTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC