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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttcccttttgtttagcttctctacaacgtaaatgcaacattatgggtgttcaaaacttgtaaattgggattttgcagATGAAGCAAGCCAAAACTGAACTTGTGTCAGCTAGTAAAGTGGCTTATCGCTTCCTCTCGAATGTTACTTCGAACGTAACCAATGGCTCCAATGGCTCTC

Basic information

species Arabidopsis thaliana
transcript AT4G25680.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874751|gb|AU235582.1|AU235582
EST:     CTAATGCTGGGGACACAGCCTTGGAAGTGGCAGGAAACACAGCAATGCGG                         ATGAAGCAAGCCAAAACTGAACTTGTGTCAGCTAGTAAAGTGGCTTATCGC
genomic: CTAATGCTGGGGACACAGCCTTGGAAGTGGCAGGAAACACAGCAATGCGGgtgggttccc ... gattttgcagATGAAGCAAGCCAAAACTGAACTTGTGTCAGCTAGTAAAGTGGCTTATCGC
EST: gi|124821702|gb|EH906568.1|EH906568
EST:     CACAGCAATGCGG                         ATGAAGCAAGCCAAAACTGAACTTGTGTCAGCTAGTAAAGTGGCTTATCGC
genomic: CACAGCAATGCGGgtgggttccc ... gattttgcagATGAAGCAAGCCAAAACTGAACTTGTGTCAGCTAGTAAAGTGGCTTATCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaacgtaaatgcaacattatgggtgttcaaaacttgtaaattgggattttgcagATGAAGCAAGCCAAAACTGAACTTGTGTCAGCTAGTAAAGTGGCTTATCGCTTCCTCTCGAATGTTACTTCGAACGTAACCAATGGCTCCAATGGCTCTC
                             aaaacttgtaaatt  TA-rich tract