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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttccgctttatttggctagtcacatgttcagttttaagtttcctaactgagtttctcttaaaataatttttatatatattcagGTTGTGAAAAATAATTCAGATGGATCGGAATCTGGCTCCTTATTCCATAATATGAATCACACACTTACAGTATATGGTTCCAGGCTTCTTAGACACTGG

Basic information

species Arabidopsis thaliana
transcript AT4G25540.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25540.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv16s0100g01310.t01 (Vitis vinifera), 3'ss of exon 3
--------------gtactttccgctt-tatttggctagtcacatgttcagttttaagtttcctaactgagtttctcttaaaataatttttatatatattcagGTTGTGAAAAATAATTCAGATGGATCGGAATCTGGCTCCTTATTCCATAATATGAATCACACACTTACAGTATATGGTTCCAGGCTTCTTAGACACTGG
              ||  |||    |  ||||| | |  | |      || ||  || |||  |   ||  ||     |||   |||  ||| ||   || ||||| | || ||| | || |||||||| || ||||||||||| || ||||  ||||| ||||| |||||  ||| |||||| || |||||||| ||||||
atgtaattaaaaaggtgatttgaattgatattttgttcttta---acacatttcaaaattttgttcttgttttgacactaaccaaatggttaaatgcttttagGTTCTAAATAATCACTCTGATGGATCTGAGTCTGGCTCCTTGTTGCATACCATGAACCACACTCTTACCATATTTGGTTCGAGACTTCTTAGGCACTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttttaagtttcctaactgagtttctcttaaaataatttttatatatattcagGTTGTGAAAAATAATTCAGATGGATCGGAATCTGGCTCCTTATTCCATAATATGAATCACACACTTACAGTATATGGTTCCAGGCTTCTTAGACACTGG
            tcctaac  putative branch site (score: 1)
               taactgagtttctctt  TA-rich tract