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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaggttttatgagtttcttgctcaacatttatcttttaaaactgatgtgcataggtaaagaaatgtgtctaaggaaatagttaagcttctaagattgcttaagtagtatgcaatgtgttggcttatgagatagaaaatcatgatatttcttttctcttagagcaccgcttaattgttgtttctctttcagGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGCCCAATAGCAAAATCATATCGAGCTGTAAGTGGTGTGGCACCACTTGTGG

Basic information

species Arabidopsis thaliana
transcript AT4G25030.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86032141|gb|DR327894.1|DR327894
EST:     CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAG                         GGAGGAAACCACGAAG
genomic: CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAGgtaaaggttt ... tctctttcagGGAGGAAACCACGAAG
EST: gi|86032126|gb|DR327879.1|DR327879
EST:     CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAG                         GGAGGAAACCACGAAGCCATNNGGCGACGAATGGCTTAAAACAGGAAACTG
genomic: CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAGgtaaaggttt ... tctctttcagGGAGGAAACCACGAAGCCATG-GGCGACGAATGGCTTAAAACAGGAAACTG
EST: gi|301501095|gb|HO206635.1|HO206635
EST:     CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAG                         GGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
genomic: CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAGgtaaaggttt ... tctctttcagGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
EST: gi|124868378|gb|EH952815.1|EH952815
EST:     TCAGATTCATCCAAAAATAAG                         GGAGGAAACCGCGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
genomic: TCAGATTCATCCAAAAATAAGgtaaaggttt ... tctctttcagGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
EST: gi|301501844|gb|HO207384.1|HO207384
EST:     CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAG                         GGAGGAAACCACGAAGCCATGGGCGACGAAT
genomic: CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAGgtaaaggttt ... tctctttcagGGAGGAAACCACGAAGCCATGGGCGACGAAT
EST: gi|86032134|gb|DR327887.1|DR327887
EST:     CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAG                         GGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
genomic: CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAGgtaaaggttt ... tctctttcagGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
EST: gi|19875699|gb|AU236530.1|AU236530
EST:     CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATNCNAAAATNAG                         GGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
genomic: CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAGgtaaaggttt ... tctctttcagGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
EST: gi|86032130|gb|DR327883.1|DR327883
EST:     CTGACATGTTTGAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAG                         GGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
genomic: CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAGgtaaaggttt ... tctctttcagGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
EST: gi|86032129|gb|DR327882.1|DR327882
EST:     CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAG                         GGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
genomic: CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAGgtaaaggttt ... tctctttcagGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
EST: gi|86032127|gb|DR327880.1|DR327880
EST:     CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAG                         GGAGGAAACCACGAAGCCATGGGCGAAGAATGGCTTAAAACAGGAAACTGC
genomic: CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAGgtaaaggttt ... tctctttcagGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
EST: gi|86032140|gb|DR327893.1|DR327893
EST:     CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAG                         GGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
genomic: CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAGgtaaaggttt ... tctctttcagGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
EST: gi|301501084|gb|HO206624.1|HO206624
EST:     CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAG                         GGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
genomic: CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAGgtaaaggttt ... tctctttcagGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
EST: gi|86032139|gb|DR327892.1|DR327892
EST:     CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAG                         GGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC
genomic: CTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAGgtaaaggttt ... tctctttcagGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcatgatatttcttttctcttagagcaccgcttaattgttgtttctctttcagGGAGGAAACCACGAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGCCCAATAGCAAAATCATATCGAGCTGTAAGTGGTGTGGCACCACTTGTGG
                               gcttaat  putative branch site (score: 4)
                                     ttgttgtttctctttc  CT-rich tract
       atatttctttt  TA-rich tract