1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatatcacacattcagtcactttcatatagctccattccaattccatcttcttagtttaagaagattgttttttttgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG
species | Arabidopsis thaliana |
transcript | AT4G23470.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCEST: gi|86038885|gb|DR334640.1|DR334640
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: GTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGCATATGTCAAG GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGA-GCEST: gi|116434599|gb|EG477191.1|EG477191
genomic: -TGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATG-ATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCEST: gi|125221790|gb|EL235875.1|EL235875
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: ATGATATGTCAAG GTACGTCTGCTTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGEST: gi|86038879|gb|DR334634.1|DR334634
genomic: ATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGC-TGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAG
EST: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCEST: gi|301501098|gb|HO206638.1|HO206638
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCEST: gi|86038889|gb|DR334644.1|DR334644
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCEST: gi|86038878|gb|DR334633.1|DR334633
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCEST: gi|86038880|gb|DR334635.1|DR334635
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCEST: gi|86038886|gb|DR334641.1|DR334641
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCEST: gi|86038882|gb|DR334637.1|DR334637
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCEST: gi|86038888|gb|DR334643.1|DR334643
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCEST: gi|301502433|gb|HO207973.1|HO207973
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCEST: gi|86038877|gb|DR334632.1|DR334632
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG GTACGTCTGGCTGTGCCGGTTACATGCCTTGGTAGTGGTAGGGTGTGGAGAEST: gi|86038881|gb|DR334636.1|DR334636
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTG-CTGTGCCGGTTACATGCCTTG-TAGTGGTAGG-TGTGGAGA
EST: TGTGCATCATACTTGCTTCGCA-GCGTGCGCTTTACGATGATATGTCAAG GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCEST: gi|116434598|gb|EG477190.1|EG477190
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
EST: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG GTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
genomic: TGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAGgtatatcaca ... tgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGC
ctccattccaattccatcttcttagtttaagaagattgttttttttgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG
ttgttttttttgtctc CT-rich tract
tttaagaagattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatcacacattcagtcactttcatatagctccattccaattccatcttcttagtttaagaagattgttttttttgtctcgcagGTACGTCTGCTGTGCCGGTTACATGCCTTGTAGTGGTAGGTGTGGAGAAGCCAAATGTCCTCAACTTTGTCTTGCCACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC