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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatcatttcttattacacgtagttgaattgagatcgccttgtaacttgtccacaatgcttataatattttttgattatctattctttttctcttcggattttagTTTGCCACAATTAGTTACAAAGATGACCACTATGGAGCAAAAGGAAACATTAACGTATGGAATCCAAACGTCTCACCTGATCAATTTAGTCTTGCGGCTA

Basic information

species Arabidopsis thaliana
transcript AT4G23390.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878033|gb|AU238864.1|AU238864
EST:     CAGGACAAGTGTCTGCAAAGGACAAGAAAATTGATTTAACTGGTCATCAT                         TTTGCCACAATTAGTT-CNAAGATGACCACTATGGAGCAAA-GGAAACATT
genomic: CAGGACAAGTGTCTGCAAAGGACAAGAAAATTGATTTAACTGGTCATCATgtaagaatca ... cggattttagTTTGCCACAATTAGTTACAAAGATGACCACTATGGAGCAAAAGGAAACATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccacaatgcttataatattttttgattatctattctttttctcttcggattttagTTTGCCACAATTAGTTACAAAGATGACCACTATGGAGCAAAAGGAAACATTAACGTATGGAATCCAAACGTCTCACCTGATCAATTTAGTCTTGCGGCTA
                   ttttgat  putative branch site (score: 4)
                 ttttttgattatctat  CT-rich tract
         ttataatattttttga  TA-rich tract