1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagttacattagtaatgtaattgcgtgtgtgtgaaagtaagaatgttagctgatactttttactaaaaccggtcttactgtgaaacagTTAACTCTTGAAGAAAGCAGAGAAGCCAACACTGCAACGCGGGAAGCAGCGCATATGATTTCAAGAGGCCTTCATAACAAG
species | Arabidopsis thaliana |
transcript | AT4G22740.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGGCAACTACTATACTTCCTCAAAGACCAGAAGGACAGGAAGTGATGGG TTAACTCTTGAAGEST: gi|124819479|gb|EH904345.1|EH904345
genomic: ACGGCAACTACTATACTTCCTCAAAGACCAGAAGGACAGGAAGTGATGGGgtgagttaca ... tgtgaaacagTTAACTCTTGAAG
EST: ACGGCAACTACTATACTTCCTCAAAGACCAGAAGGACAGGAAGTGATGGG TTAACTCTTGAAGAAAGCAGAGAAGEST: gi|86077542|gb|DR373299.1|DR373299
genomic: ACGGCAACTACTATACTTCCTCAAAGACCAGAAGGACAGGAAGTGATGGGgtgagttaca ... tgtgaaacagTTAACTCTTGAAGAAAGCAGAGAAG
EST: ACGGCAACTACTATACTTCCTCAAAGACCAGAAGGACAGGAAGTGATGGG TTAACTCTTGAAGAAAGCAGAGAAGCCAACACTGCAACGCGGGAAGCAGCG
genomic: ACGGCAACTACTATACTTCCTCAAAGACCAGAAGGACAGGAAGTGATGGGgtgagttaca ... tgtgaaacagTTAACTCTTGAAGAAAGCAGAGAAGCCAACACTGCAACGCGGGAAGCAGCG
aaagtaagaatgttagctgatactttttactaaaaccggtcttactgtgaaacagTTAACTCTTGAAGAAAGCAGAGAAGCCAACACTGCAACGCGGGAAGCAGCGCATATGATTTCAAGAGGCCTTCATAACAAG
tcttact CT-rich tract
atactttttactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttacattagtaatgtaattgcgtgtgtgtgaaagtaagaatgttagctgatactttttactaaaaccggtcttactgtgaaacagTTAACTCTTGAAGAAAGCAGAGAAGCCAACACTGCAACGCGGGAAGCAGCGCATATGATTTCAAGAGGCCTTCATAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG