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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatactgtctcacttctctcaacattctgagttattttttgttttgcttttatgtgaattatgctgaaatggtatcatattcttagtacttttctatttgttgaaacgattttgcatttgactactgattttgtttctgcagGCACTTCTTTTTTACAGCAATGCTCTTTGTATATGGTCGAATACTTAGTCAACGGCTAGTCAACACTGTGACTCCAGACAAAGTCCTATATCGACTGGTC

Basic information

species Arabidopsis thaliana
transcript AT4G22340.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G22340.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv00s0598g00010.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------gtaattatactgtctcacttctctcaacattctgagttattttttgtt-ttgcttttatgtgaattatgctgaaatggtatcatattcttagtacttttctatttgttgaaacg-attttgcatttgactact----gattttgtttctgcagGCACTTCTTTTTTACAGCAATGCTCTTTGTATATGGTCGAATACTTAGTCAACGGCTAGTCAACACTGTGACTCCAGACAAAGTCCTATATCGACTGGTC
                             | ||   |   | |   |||    ||   |||      | || || |  || || | ||    | ||| | |  | |||  ||   |  |||   |||  ||   ||  |    ||||   ||||   || |    |||||| || || ||||||||| || || ||||||||||| ||||||||||| || || || ||||||||||| ||||| || || ||||| |||||| || |||||   || || 
gtaagtgtaccagtttactatccatagattgatggaatgttgttgtttcatggaaagctctcctgagtgttctgctactgattatttgaagctaatgtttattttgtaatattgaccaagttactttggatgctttatattacatttgatatttacttattctcagatttttttact-cagGCACTTTTTCTTCACAGCAATGCTATTTGTATATGGCCGCATTCTCAGTCAACGGCTGGTCAATACAGTAACTCCTGACAAATTCTTATATAAGCTTGTG

upper sequence: AT4G22340.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv00s0187g00380.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------gtaattatactgtctcacttctctcaacattctgagttattttttgtt-ttgcttttatgtgaattatgctgaaatggtatcatattcttagtacttttctatttgttgaaacg-attttgcatttgactact----gattttgtttctgcagGCACTTCTTTTTTACAGCAATGCTCTTTGTATATGGTCGAATACTTAGTCAACGGCTAGTCAACACTGTGACTCCAGACAAAGTCCTATATCGACTGGTC
                             | ||   |   | |   |||    ||   |||      | || || |  || || | ||    | ||| | |  | |||  ||   |  |||   |||  ||   ||  |    ||||   ||||   || |    |||||| || || ||||||||| || || ||||||||||| ||||||||||| || || || ||||||||||| ||||| || || ||||| |||||| || |||||   || || 
gtaagtgtaccagtttactatccatagattgatggaatgttgttgtttcatggaaagctctcctgagtgttctgctactgattatttgaagctaatgtttattttgtaaaattgaccaagttactttggatgctttatattacatttgatatttacttattctcagatttttttact-cagGCACTTTTTCTTCACAGCAATGCTATTTGTATATGGCCGCATTCTCAGTCAACGGCTGGTCAATACAGTAACTCCTGACAAATTCTTATATAAGCTTGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttttctatttgttgaaacgattttgcatttgactactgattttgtttctgcagGCACTTCTTTTTTACAGCAATGCTCTTTGTATATGGTCGAATACTTAGTCAACGGCTAGTCAACACTGTGACTCCAGACAAAGTCCTATATCGACTGGTC
                                   tactgat  putative branch site (score: 2)
                                         ttttgtttct  CT-rich tract
                                        attttgttt  TA-rich tract