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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtttttggaattttccttctgtttttgtttgtttgatctttctgctctttggattttggttcaataactttggtctctttcgttttggttacagGGATGTTAGTGGTAACAGCATCCATGATACACTTCCATATCAGTTGCCACCGAATCTCACAAGCCT

Basic information

species Arabidopsis thaliana
transcript AT4G22130.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G22130.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA15G11820.1 (Glycine max), 3'ss of exon 3
--gtattgtttttggaattttccttctgtttttgtttgtttgatcttt-ctgctctt-tggattttggttcaataact-ttggtctctt-----tcgttttggt-----tacagGGATGTTAGTGGTAACAGCATCCATGATACACTTCCATATCAGTTGCCACCGAATCTCACAAGCCT
  |   |  |||||   | ||  || || |    |     | |||||| ||| | |  |  ||  ||||  | |   | ||||  | ||     |  |||| ||     |  || ||  | |||| |||||  |||||||||||| |||| || ||||||||||||||||| || |||||
gtgagataattttgctctgttatttgtgctacactacacataatctttactgttttaatatatgctggtgaactggttattggctttttaattcttatttttgtgtttttgtagTGACTTAAGTGATAACAAGATCCATGATACAATTCCCTACCAGTTGCCACCGAATCTTACGAGCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgctctttggattttggttcaataactttggtctctttcgttttggttacagGGATGTTAGTGGTAACAGCATCCATGATACACTTCCATATCAGTTGCCACCGAATCTCACAAGCCT
                      caataac  putative branch site (score: 2)
                                  tctctttcgtttt  putative PPT
                       aataacttt  TA-rich tract