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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgtatttcttcatctataaaccgatttctggatttcgattatggtcgataagtaatcaggttattgtgtaaacggtttagGTAGCTGTTGCGGCGGCGATCGGAGCTAAGTTCGGTGTCGATGGAACCCCAGGCGTTTTACCAAAATGGTACGCCATTGTTGTGGTTTTGTTCATATGCA

Basic information

species Arabidopsis thaliana
transcript AT4G21480.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073265|gb|DR369022.1|DR369022
EST:     GAAGACGATTTCTCTTCCTTGAAGGAGGACTCCAAATGCTAATTTCTCAG                         GTAGCTGTTGCGGCGGCGATCGGAGCTAAGTTCGGTGTCGATGGA-CCCCN
genomic: GAAGACGATTTCTATTCCTTGAAGGAGGATTCCAAATGCTAATTTCTCAGgttttgtatt ... aacggtttagGTAGCTGTTGCGGCGGCGATCGGAGCTAAGTTCGGTGTCGATGGAACCCCA
EST: gi|164105410|gb|ES180024.1|ES180024
EST:     CTAATTTTTCAG                         GTAGCTGTTGCGGCGGCGATCGGAGCTAAGTTCGGTGTCGATGGAACCCCA
genomic: CTAATTTCTCAGgttttgtatt ... aacggtttagGTAGCTGTTGCGGCGGCGATCGGAGCTAAGTTCGGTGTCGATGGAACCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctggatttcgattatggtcgataagtaatcaggttattgtgtaaacggtttagGTAGCTGTTGCGGCGGCGATCGGAGCTAAGTTCGGTGTCGATGGAACCCCAGGCGTTTTACCAAAATGGTACGCCATTGTTGTGGTTTTGTTCATATGCA
                      ataagtaat  TA-rich tract