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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actctgaatttatcttcatattgacatggtttcatttgcactgatagctttcacttttggctctctcaatgaacgcggctaatatatttttctaatacagTCCTCAGGTTACAATAGCTACCGCAATTATCTTCTGTCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGG

Basic information

species Arabidopsis thaliana
transcript AT4G19600.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877520|gb|AU238351.1|AU238351
EST:     CGCAAGTCATACTGTACATTTTTGCAGGATTTAGGCATGAGATTAAAAGT                         TCCTCAGGTTACAATAGCTACCGCAATTATCTTCTGTCATCGATTCTTCAT
genomic: CGCAAGTCATACTGTACATTTTTGCAGGATTTAGGCATGAGATTAAAAGTgtaagtataa ... tctaatacagTCCTCAGGTTACAATAGCTACCGCAATTATCTTCTGTCATCGATTCTTCAT
EST: gi|116422455|gb|EG465047.1|EG465047
EST:     CGCAAGTCATACTGTACATTTTTGCAGGATTTAGGCATGAGATTAAAAGT                         TCCTCAGGTTACAATAGCTACCGCAATTATCTTCTGTCATCGATTCTTCAT
genomic: CGCAAGTCATACTGTACATTTTTGCAGGATTTAGGCATGAGATTAAAAGTgtaagtataa ... tctaatacagTCCTCAGGTTACAATAGCTACCGCAATTATCTTCTGTCATCGATTCTTCAT
EST: gi|124839728|gb|EH924167.1|EH924167
EST:     CATGAGATTAAAAGT                         TCCTCAGGTTACAANAGCTACCGCAATTATCTTCTGTCATCGATTCTTCAT
genomic: CATGAGATTAAAAGTgtaagtataa ... tctaatacagTCCTCAGGTTACAATAGCTACCGCAATTATCTTCTGTCATCGATTCTTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctttcacttttggctctctcaatgaacgcggctaatatatttttctaatacagTCCTCAGGTTACAATAGCTACCGCAATTATCTTCTGTCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGG
                                            ttctaat  putative branch site (score: 2)
                                       tatttttct  CT-rich tract
                                  taatatatttttctaa  TA-rich tract