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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatgattctttataagggttctcttcttagatatgccttcagttttggttttttgatgtctcctacttggtatgcagTACAGAAAGAGTGAATTTGTTGAGAATCGAAGGTCAAACTAAGGTTGGAGGCACACTTGTGTGTGTTATGGGTGCTGTCTTCATGGTTGTATTTCGAGGT

Basic information

species Arabidopsis thaliana
transcript AT4G19185.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877450|gb|AU238281.1|AU238281
EST:     TTCAACCATCCATNCCGGTCTTCACCTTNTCTCTTGGCTGTCATGATGGG                         TACAGAAAGAGTGAATTTGTTGAGAATCGAANGGT-AAACTAAGGTTGGAA
genomic: TTCAACCATCCATCCCGGTCTTCACCTT-TCTCTTGGCTGTCATGATGGGgtgagtatga ... tggtatgcagTACAGAAAGAGTGAATTTGTTGAGAATCGAA-GGTCAAACTAAGGTTGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcttagatatgccttcagttttggttttttgatgtctcctacttggtatgcagTACAGAAAGAGTGAATTTGTTGAGAATCGAAGGTCAAACTAAGGTTGGAGGCACACTTGTGTGTGTTATGGGTGCTGTCTTCATGGTTGTATTTCGAGGT
                            ttttgat  putative branch site (score: 4)
                                    tctcctactt  CT-rich tract
                          ttttttgat  TA-rich tract