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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcttagttttctctcaacttgttttttaatatctttttcatcgggccccttgatttgtggcttatgagtttagttctcaatgccttatgaatttctagGTACAAGTTAATTAAAGAGGTTGGTGATGGAACTTTTGGTAGTGTTTGGCGAGCTATAAATAAGCAGACGGGTGAAGTC

Basic information

species Arabidopsis thaliana
transcript AT4G19110.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G19110.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G108829_T01 (Zea mays), 3'ss of exon 4
gtagcttagttttctctcaacttgttttttaatatctttt---tcatcgggccccttgatt-tgtggcttatgagttt--agttctcaatgccttatga-atttct----agGTACAAGTTAATTAAAGAGGTTGGTGATGGAACTTTTGGTAGTGTTTGGCGAGCTATAAATAAGCAGACGGGTGAAGTC
     | | |||| | |  ||| | | ||||   | ||||   | ||    |  |||  || |   | ||||  ||||   ||| |   || ||||  | || |||    || | |||||| ||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||||| ||||  |||||||| 
----gtaaattttatattgactggctatttagatttttttatcttataacacttcttagttctacagattatctgttttaggttatttttgtcttacaacatgtcttcacagATTCAAGTTGATTAAGGAAGTTGGCGATGGGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAGAATGGTGAAGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggccccttgatttgtggcttatgagtttagttctcaatgccttatgaatttctagGTACAAGTTAATTAAAGAGGTTGGTGATGGAACTTTTGGTAGTGTTTGGCGAGCTATAAATAAGCAGACGGGTGAAGTC
    ccttgat  putative branch site (score: 5)
                                                tttct  putative PPT
                                         ttatgaattt  TA-rich tract