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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttgtttgttacatttcaagttatatatataatatatgtaaattaacttatgtttggttgcatatctttcttgagtaatcatttgacattgtttttttctgtttgattcaccagtaagtttttgtgttgaatgttgatattgtagCAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAATGACTCTGCTGGGTCTGGACAGAAAGCACTTAATCTTGTTCGAATG

Basic information

species Arabidopsis thaliana
transcript AT4G18975.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116393001|gb|EG435593.1|EG435593
EST:     GAGAAGGAAGCTGGGAAATTGGACAGAGGTTATGTTGCCACTGTGAACAG                         CAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAA
genomic: GAGAAGGAAGCTGGGAAATTGGACAGAGGTTATGTTGCCACTGTGAACAGgtttgttgtt ... gatattgtagCAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAA
EST: gi|116392999|gb|EG435591.1|EG435591
EST:     GAGAAGGAAGCTGGGAAATTGGACAGAGGTTATGTTGCCACTGTGAACAG                         CAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAA
genomic: GAGAAGGAAGCTGGGAAATTGGACAGAGGTTATGTTGCCACTGTGAACAGgtttgttgtt ... gatattgtagCAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttttctgtttgattcaccagtaagtttttgtgttgaatgttgatattgtagCAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAATGACTCTGCTGGGTCTGGACAGAAAGCACTTAATCTTGTTCGAATG
                                         tgttgat  putative branch site (score: 4)
                        taagttttt  TA-rich tract