Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtctttgaaatattctttgaggtttgttttatgagattctttgatattaaacttacaaatatatatatctttcactagAATTTCAATAAGCCAGTGGGTACTGAAGCACTACCGCAAGGAATTATCGAGAAAACATCGAACCTGGAAACACAACATCTATGGAACTACGATGACACAA

Basic information

species Arabidopsis thaliana
transcript AT4G18530.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116411180|gb|EG453772.1|EG453772
EST:     ATAACAGTACTGATAAGATGCAGAATGCAACAACAACCAGTACATGCAAG                         AATTTCAATAAGCCAGTGGGTACTGAAGCACTACCGCAAGGAATTATCGAG
genomic: ATAACAGTACTGATAAGATGCAGAATGCAACAACAACCAGTACATGCAAGgtttgtcttt ... ctttcactagAATTTCAATAAGCCAGTGGGTACTGAAGCACTACCGCAAGGAATTATCGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttttatgagattctttgatattaaacttacaaatatatatatctttcactagAATTTCAATAAGCCAGTGGGTACTGAAGCACTACCGCAAGGAATTATCGAGAAAACATCGAACCTGGAAACACAACATCTATGGAACTACGATGACACAA
                          aacttac  putative branch site (score: 2)
                                            tctttcact  putative PPT
            attctttgatattaaa  TA-rich tract