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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacgttaaaagagttggtttattgtctgttttctcttttcaagcatgaaagttccgatagctaaacttttttgttgttccgataaaaaaaacagGGTGTGAACAAAGGTCTTGTGGCAGAGAGGCTTCTAACAACGATGCAAGAAAAAGGGAAACTTTTGGATTTCATTCTCTGCGTCGGTGATGATCGGTCTG

Basic information

species Arabidopsis thaliana
transcript AT4G17770.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86082708|gb|DR378467.1|DR378467
EST:     ATCCAGTCTCTGTCAAGACTGGACAACAACTCGTTGAAGTTAAACCACAG                         GGTGTGAACAAAGGTCTTGTGGCAGAGAGGCTTCTAACAACGATGCAAGAA
genomic: ATCCAGTCTCTGTCAAGACTGGACAACAACTCGTTGAAGTTAAACCACAGgtaagacgtt ... aaaaaaacagGGTGTGAACAAAGGTCTTGTGGCAGAGAGGCTTCTAACAACGATGCAAGAA
EST: gi|164233672|gb|ES016342.1|ES016342
EST:     ATCCAGTCTCTGTCAAGACTGGACAACAACTCGTTGAAGTTAAACCACAG                         GGTGTGAACAAAGGTCTTGTGGCAGAGAGG
genomic: ATCCAGTCTCTGTCAAGACTGGACAACAACTCGTTGAAGTTAAACCACAGgtaagacgtt ... aaaaaaacagGGTGTGAACAAAGGTCTTGTGGCAGAGAGG
EST: gi|164064439|gb|ES173418.1|ES173418
EST:     TTAAACCACAG                         GGTGTGAACAAAGGTCTTGTGGCAGAGAGGCTTCTAACAACGATGCAAGAA
genomic: TTAAACCACAGgtaagacgtt ... aaaaaaacagGGTGTGAACAAAGGTCTTGTGGCAGAGAGGCTTCTAACAACGATGCAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagcatgaaagttccgatagctaaacttttttgttgttccgataaaaaaaacagGGTGTGAACAAAGGTCTTGTGGCAGAGAGGCTTCTAACAACGATGCAAGAAAAAGGGAAACTTTTGGATTTCATTCTCTGCGTCGGTGATGATCGGTCTG
                   agctaaa  putative branch site (score: 3)
                      taaacttttttgtt  TA-rich tract