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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatcacactgtttttagttactagttgctatgccatcctgtaaatgtgttaatagtatggaatcaagtgagtaatggtttggttctctggttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACA

Basic information

species Arabidopsis thaliana
transcript AT4G17390.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 3
gtatgcatcacactgtttttagttactagttgctatgccatcctgtaaatg--tgttaatagtatggaatcaagtgagtaatggtttggttctct--ggttttct-cagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACA
                  |   || |   || ||  |   |     | |||  | | || | | |     |     | |||||  |||||| |||  |||||  | |||||||| |||||||||||||  ||||| |||||||| ||   ||| |||| |||  |||| ||||| ||||||||||||||| ||||||| ||||||||||
-----------------gtacatttcactttactgagatctttcaaagatgattatcaacaatgtatctgccttccattaatgacttggttttctttggtttaatgcagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGTGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
gtatgcatcacactgtttttagttactagttgctatgccatcctgtaaatgtgttaatagtatggaatcaagtgagtaatggtttggttctctggttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACA
   |  ||   | |    |  | |  |       ||| ||      |||  | | |   |  |   || || |   |  || |||  ||  ||   | |   ||||||| |||||||||||||  ||||| |||||||| ||   ||| ||||  ||  |||| ||||| ||||||||||||||| ||||||| ||||||||||
--gtatatttgatttcactgggatcttgcggaagatggca----aaaaaaatttcagctgcttttcattaattcctt--tgttttcattggcttaatgt---agGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 3
gtatgcatcacactgtttttagttactagttgctatgccatcctgtaaatgtgttaatag-tatggaatcaagtgagtaatggtttgg--ttctctggttttct----cagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACA
   | ||||  | |||    |  |      | || |   | | |   |   |||| |||  | |  |||    |   |||| |  ||   | | |   | | ||    |||||   |||||||||||||| |||||| |||||||| |||  ||| ||||| ||| ||  ||  || || |||||||||||| | ||||||||||||||||
--gtacatcggattgta---acatgaacactcctctttaaacatactagcttgtttatatctgtcaaattttttttctaattgcctgacatgcccatatctcctatcacagGATAGTACCTACAAGTACTTCGAGATCATCCTTGTGGACGTTGCCCACAAAGCCATCAAAACCGACCCGAGGATCAACTGGCTATGCAACCCTGTGCACA

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G034794_T03 (Zea mays), 3'ss of exon 1
gtatgcatcacactgtttttagttactagttgctatgccatcctgtaaatgtgttaatagtatggaatcaagtgagtaatggtttggttctctggttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACA
|||||| | |    |||     | || || |   |||  |   |  |    ||| | || |  |    ||  |      ||| |    |  ||||    |  ||||    |||||||||||||  ||||| || ||||| ||    || |||| | || |||| ||||||||||||||||||||| | ||||| ||||||||||
gtatgcttaattgagttgagcttaacaagatatcatgagaattttcatccttgtcagtact--gatgccacatc-----tggctcttgttactggacaac--agGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACTACCATCCGCAATGATCCAAGGATCAACTGGCTATGCAATCCTGTGCACA

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA05G04870.1 (Glycine max), 3'ss of exon 3
gtatgcatcacactgtttttagttactagttgctatgccatcctgtaaatgtgttaatagtatggaatcaagtgagtaatggtttggttctctggttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACA
         |   | | |||    | | ||||  |    | |||| | |||  ||  |      || |     || | ||  | | ||| | || || |  |||||||| || ||||| || |  ||| | || || || ||   ||| ||||  || ||  ||||||||||||| ||||||||| |||||||||| || || |
-------gtatgttatctttg--catt-gttgaaagtgaaacctggatatgaattgct------gactggttggactgattctattgttatgtg-ttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGCGCTGTTAGAAATGATCCAAGAATCAACTGGCTCTGCAACCCAGTCCATA

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 3
---------------gtatgca-tcacactgtttttagttactagttgctatgccatcctgtaaatgtgttaatagtatggaatcaagtgagtaatggtttggttctctggttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACA
                 || || | | |   ||| |  |  | |||||  |||   | || |  ||    |  |  ||   | |   |  | ||||| |       |   |||    ||||| || || ||||||||||| ||||| |||||||| ||  |||| |||||  || |||||||||| ||||| ||||| ||||| ||||| ||||||||||
gtttgtagtgtgattccattcaatgatatgatttgtcctatccagttgtaatgttttgctttctata---ttgttttacacactactgccattaatgataaaacgtttctgttgatgcagGATTCAACTTACAAGTACTATGAGATAATCCTTGTTGATGCTGCTCACAACACCATCCGAAATGACCCAAGAATCAATTGGATATGCAAACCTGTGCACA

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 3
gtatgcatcacactgtttttagttactagttgc-tatgccatcctgtaaatgtgttaatagtatggaatcaagtgagtaatggtttggttctctggttttc---tcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACA
       |||    || |||  ||  ||  |   |||   || |||   |  |    |||     |   | |||  |||     ||  |       |||||   |||||| ||||| ||||| ||||| ||||| ||||| || ||  |||| || |||||  | |||||||||||||||||||||||||||||||| ||||||||||
-------tcaattcgtctttttttcatatatatatatatgatgctg-gcacatacacatatgtgagctcctagtcggtagctaatttctctgaaaattttccattcagGATTCTACATACAAATACTATGAGATAATCCTAGTTGATGCTGCCCATAATGCAATTCGAAATGATCCAAGGATCAACTGGATCTGCAAGCCTGTGCACA

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: PP1S68_114V6.1 (Physcomitrella patens), 3'ss of exon 3
gtatgcatcacactgtttttagttactagttgctatgccatcctgtaaatgtgttaatagtatggaatcaagtg----agtaatggtttggttctctggttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACA
       |  ||  | ||| | |||  | ||| | |       | | | ||| |      | || | || |||      | | ||  |  |     | | ||   |||||||| |||||||||||||  ||||||||||| || ||||||  |||    |   | || || || |||||||||||||||||    ||||| || ||||
-----actgccagcgatttcactta--atttgttgtagggctttatcattgtttcgggtat-tgcactccagtaccgtggaattgaatcaggaaggttgcttgtgcagGACTCAACCTACAAGTACTTTGAGATTATCCTAGTTGACCCTCAACATGCAGTTATTCGCAAGGACCCAAGGATCAACTGGATTGTGAACCCCGTCCACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164031669|gb|ES112084.1|ES112084
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAA
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAA
EST: gi|86021787|gb|DR317540.1|DR317540
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|86021781|gb|DR317534.1|DR317534
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|124811349|gb|EH896215.1|EH896215
EST:     CTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: CTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|116413476|gb|EG456068.1|EG456068
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|47828590|gb|CK118274.1|CK118274
EST:     GTCGCANACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTTACA-GTACTACGAGATTATCCTTGTAGACCCTGCACACAA
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCT-ACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAA
EST: gi|163993267|gb|EL981183.1|EL981183
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCC
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCC
EST: gi|86021792|gb|DR317545.1|DR317545
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|116413469|gb|EG456061.1|EG456061
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|47830660|gb|CK120344.1|CK120344
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|164172394|gb|EL982435.1|EL982435
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTAC
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTAC
EST: gi|116413465|gb|EG456057.1|EG456057
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|125278220|gb|EL292305.1|EL292305
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCAC
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCAC
EST: gi|86021793|gb|DR317546.1|DR317546
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|116413464|gb|EG456056.1|EG456056
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|164100305|gb|ES200186.1|ES200186
EST:     CGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: CGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|164169718|gb|EL982384.1|EL982384
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAAGATTATCC
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGA-GATTATCC
EST: gi|125192838|gb|EL207792.1|EL207792
EST:     TCCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTA
genomic: T-CGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTA
EST: gi|116413474|gb|EG456066.1|EG456066
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTGCCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|86021794|gb|DR317547.1|DR317547
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|47830178|gb|CK119862.1|CK119862
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|163987127|gb|ES037937.1|ES037937
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGT
EST: gi|86079048|gb|DR374805.1|DR374805
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|86021780|gb|DR317533.1|DR317533
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|116413466|gb|EG456058.1|EG456058
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|125007005|gb|EL079274.1|EL079274
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAG
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAG
EST: gi|125133910|gb|EL175124.1|EL175124
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATAAG                         GACTCTAACCTACAAGTACTACGAGATTATCCTTGTAGA
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTA-CCTACAAGTACTACGAGATTATCCTTGTAGA
EST: gi|116413471|gb|EG456063.1|EG456063
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|164057815|gb|ES185057.1|ES185057
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTA
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTA
EST: gi|116413470|gb|EG456062.1|EG456062
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|125293925|gb|EL308010.1|EL308010
EST:     CTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: CTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|86021784|gb|DR317537.1|DR317537
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|47829380|gb|CK119064.1|CK119064
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|86021782|gb|DR317535.1|DR317535
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|124748820|gb|EH838950.1|EH838950
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTG
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTG
EST: gi|125045762|gb|EL118031.1|EL118031
EST:     TAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACGAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: TAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|116413463|gb|EG456055.1|EG456055
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|116413473|gb|EG456065.1|EG456065
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|47829959|gb|CK119643.1|CK119643
EST:     TCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGANG                         GACTCTACCTACA-GTACTACGAGATTATCCTTGTAGACCCTGCACACAA
genomic: TCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGA-Ggtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAA
EST: gi|116413477|gb|EG456069.1|EG456069
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTATTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|116413460|gb|EG456052.1|EG456052
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|86021779|gb|DR317532.1|DR317532
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|86021783|gb|DR317536.1|DR317536
EST:     GTCGCAAACTGGGAAGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|124821684|gb|EH906550.1|EH906550
EST:     GCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|86021795|gb|DR317548.1|DR317548
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGAACCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|86021786|gb|DR317539.1|DR317539
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|86021788|gb|DR317541.1|DR317541
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACC-TGCAC
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCAC
EST: gi|125163123|gb|EL189893.1|EL189893
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGA
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGA
EST: gi|124821227|gb|EH906093.1|EH906093
EST:     AACTCCTACTGGCTCAATGAG                         GACTTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAA
genomic: AACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGAC-TCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAA
EST: gi|86021789|gb|DR317542.1|DR317542
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|47829691|gb|CK119375.1|CK119375
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|124891941|gb|EH970843.1|EH970843
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACT
EST: gi|164064080|gb|ES036103.1|ES036103
EST:     ACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: ACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|86021785|gb|DR317538.1|DR317538
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|164062034|gb|ES153145.1|ES153145
EST:     AGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: AGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|124807169|gb|EH893594.1|EH893594
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGA
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGA
EST: gi|47828126|gb|CK117810.1|CK117810
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|124973902|gb|EL047498.1|EL047498
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTA
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTA
EST: gi|164152411|gb|ES107587.1|ES107587
EST:     GGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|47829664|gb|CK119348.1|CK119348
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAAT
EST: gi|125150003|gb|EL182893.1|EL182893
EST:     GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAG                         GACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGC
genomic: GTCGCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTACTGGCTCAATGAGgtatgcatca ... gttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgttaatagtatggaatcaagtgagtaatggtttggttctctggttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACA
  tgttaat  putative branch site (score: 3)
                                      ttctctggttttctc  putative PPT
     taatagtat  TA-rich tract