Sequence
atgc intronic sequence ATGC exonic sequencegtacatagatacttgcacatctcttttaggaactaagaacttgtttatgactagttgaataaataagaacttaatccgtttgtttcggaatcttaccagTGGATGTAGGGCAGATGCAAATGAGGCAGTTATGGTTCTCCTCCCATCTAACATAACTGTTTTCACCCTTGACTTCTCGGGGTCAGGCTTATCTGAGGGT
Basic information
species | Arabidopsis thaliana |
transcript | AT4G17150.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA07G40050.1 (Glycine max), 3'ss of exon 4
----------------------gtacatagatacttgcacatctcttttaggaactaagaacttgtttatgactagttgaataaataagaacttaatccgtttgtttcggaatcttac--cagTGGATGTAGGGCAGATGCAAATGAGGCAGTTATGGTTCTCCTCCCATCTAACATAACTGTTTTCACCCTTGACTTCTCGGGGTCAGGCTTATCTGAGGGT
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gtatttgttattaaaatggttattgtcttgatgcttttaaaaaattgtatatgtgtgatcattattttttagctattctattcttctcccttgtgatatgtgtgcatacgtacaatgatgcagTGGATGTAGGGCAGATGCCAATGAAGCTGCTGTAATTCTTCTTCCTTCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGA
upper sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA17G00770.1 (Glycine max), 3'ss of exon 4
gtacatagatacttgcacatctcttttaggaac-----taagaacttgtttatgactagttgaataa----ataagaacttaatccgtttgtttcggaatct-----------tac-------cagTGGATGTAGGGCAGATGCAAATGAGGCAGTTATGGTTCTCCTCCCATCTAACATAACTGTTTTCACCCTTGACTTCTCGGGGTCAGGCTTATCTGAGGGT
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gtactt-gttattaaaatgactcttgtcttgatgcttttaaaaaattgtatatgcatgatcatagagttttttagctattctattcttctcccttgtgatatgtgtgcatacatacaatgatgcagTGGATGTAGGGCAGATGCCAATGAAGCTGCTGTAATTCTTCTTCCTTCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGA
upper sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA15G12950.1 (Glycine max), 3'ss of exon 2
--------------------------------------------gtaca---tagatacttgcacatctcttttaggaactaagaacttgttt---atgac-tagttgaataaataagaacttaatccgtttgtttcggaatctta------ccagTGGATGTAGGGCAGATGCAAATGAGGCAGTTATGGTTCTCCTCCCATCTAACATAACTGTTTTCACCCTTGACTTCTCGGGGTCAGGCTTATCTGAGGGT
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gtatgccaatttttatggatactgctatcactgcaagagattctatacggtttacagtcataaagaccctttttgaacattcttttttttttcagaatgacacactcattccattcttctctttttccatatgtatgtgcatgtacaatgatgcagTGGATGTAGGGCAGATGCCAATGAAGCTGTTGTTATTCTTCTTCCATCAAATATTACTGTTTTTACTCTTGACTTCTCAGGGTCAGGCTTGTCTGATGGA
upper sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA09G02050.1 (Glycine max), 3'ss of exon 4
--------------------------------------------gtaca---tagatacttgcacatctcttttaggaactaagaacttgttt-----atgactagttgaataaataagaa---cttaatccgtttgtttcggaatctta--ccagTGGATGTAGGGCAGATGCAAATGAGGCAGTTATGGTTCTCCTCCCATCTAACATAACTGTTTTCACCCTTGACTTCTCGGGGTCAGGCTTATCTGAGGGT
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gtaagcaaatttttatggatactgctatcactgcaagagattctatacggtttacagtcataaagaccctttttgaacattcttttctttttttcagaatgacacactcattccattcttctcttttcatatgtatgtacatgtacaatgatgcagTGGATGTAGGGCAGATGCCAATGAAGCTGCTGTTATTCTTCTTCCATCAAATATTACTGTCTTTACTCTTGACTTTTCGGGGTCAGGCTTGTCTGATGGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19878908|gb|AU239739.1|AU239739EST: TCTCGGGAGGATACTCCTCTCCCCTGTGTTATATACTGTCATGGCAATAG TGGATGTAGGGCAGATGCAAATGAGGCAGTTATGGTTCTCCTCCCATCTAA
genomic: TCTCGGGAGGATACTCCTCTCCCCTGTGTTATATACTGTCATGGCAATAGgtacatagat ... atcttaccagTGGATGTAGGGCAGATGCAAATGAGGCAGTTATGGTTCTCCTCCCATCTAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatgactagttgaataaataagaacttaatccgtttgtttcggaatcttaccagTGGATGTAGGGCAGATGCAAATGAGGCAGTTATGGTTCTCCTCCCATCTAACATAACTGTTTTCACCCTTGACTTCTCGGGGTCAGGCTTATCTGAGGGT
acttaat putative branch site (score: 4)
tcttacc putative PPT
ttgaataaataagaac TA-rich tract