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gtactacctgcgtctcatttatcttctggagacaggattttgattctttgattcattgtttttgtatctctgctctatagGGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAGAAGTGGTTGTCGCTGGCCAATAAGATGCAGATTATTGGGTGTTATGCAC
species | Arabidopsis thaliana |
transcript | AT4G16760.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCACTTTATCGATCAGCCTGCCTATGTGGATCTGCACTGG GGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAGEST: gi|116424738|gb|EG467330.1|EG467330
genomic: GCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGGgtactacctg ... tgctctatagGGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAG
EST: GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGG GGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAGEST: gi|125189333|gb|EL204287.1|EL204287
genomic: GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGGgtactacctg ... tgctctatagGGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAG
EST: GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGG GGAATGTTTGTGEST: gi|116424736|gb|EG467328.1|EG467328
genomic: GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGGgtactacctg ... tgctctatagGGAATGTTTGTG
EST: GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGG GGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAGEST: gi|125027657|gb|EL099926.1|EL099926
genomic: GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGGgtactacctg ... tgctctatagGGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAG
EST: GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGG GGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAG
genomic: GAAGATTGAGGCACTTTATCGACCAGCCTGCCTATGTGGATCTGCACTGGgtactacctg ... tgctctatagGGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAG
ctggagacaggattttgattctttgattcattgtttttgtatctctgctctatagGGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAGAAGTGGTTGTCGCTGGCCAATAAGATGCAGATTATTGGGTGTTATGCAC
tctctgctct CT-rich tract
attttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactacctgcgtctcatttatcttctggagacaggattttgattctttgattcattgtttttgtatctctgctctatagGGAATGTTTGTGCCTGCTATTAAGGGGCAGGGTACAGAGGAGCAGCAGAAGAAGTGGTTGTCGCTGGCCAATAAGATGCAGATTATTGGGTGTTATGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT