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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttttcatatcactatgtcttggtgaaagataaaaacttgtttcttgtttgctatttgcattcttatttgtattggaagggataaaatcatctgcttgatgaattctgcagCTCCTGAAGGGTCTAAGAGTACGCAAAAGGGTGCGACAGAGAGTGCTATTGTTGTTGGTCCAACTTTACTGCGTCCAATACTGCCTAAAGGCTT

Basic information

species Arabidopsis thaliana
transcript AT4G15900.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116453833|gb|EG496425.1|EG496425
EST:     TGACCGCATCAATGAGCAGCCAGGACCTTCAAATGCTCTTTCCCTCGCAG                         CTCCTGAAGGGTCTAAGAGTACGCAAAAGGGTGCGACAGAGAGTGCTATTG
genomic: TGACCGCATCAATGAGCAGCCAGGACCTTCAAATGCTCTTTCCCTCGCAGgtgtttttca ... aattctgcagCTCCTGAAGGGTCTAAGAGTACGCAAAAGGGTGCGACAGAGAGTGCTATTG
EST: gi|47829925|gb|CK119609.1|CK119609
EST:     TGACCGCATCAATGAGCAGCCAGGACCTTCAAATGCTCTTGCCCTCGCAG                         CTCCTGAAGGGTCTAAGAGTACGCAAAAGGGTGCGACAGAGAGTGCTATTG
genomic: TGACCGCATCAATGAGCAGCCAGGACCTTCAAATGCTCTTTCCCTCGCAGgtgtttttca ... aattctgcagCTCCTGAAGGGTCTAAGAGTACGCAAAAGGGTGCGACAGAGAGTGCTATTG
EST: gi|19875877|gb|AU236708.1|AU236708
EST:     TGACCGCATCAATGAGCAGCCAGGACCTTCAAATGCTCTTTCCCTCGCAG                         CTCCTGAAGGGTCTAAGAGTACGCAAAAGGGTGCGACAGAGAGTGCTATTG
genomic: TGACCGCATCAATGAGCAGCCAGGACCTTCAAATGCTCTTTCCCTCGCAGgtgtttttca ... aattctgcagCTCCTGAAGGGTCTAAGAGTACGCAAAAGGGTGCGACAGAGAGTGCTATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcattcttatttgtattggaagggataaaatcatctgcttgatgaattctgcagCTCCTGAAGGGTCTAAGAGTACGCAAAAGGGTGCGACAGAGAGTGCTATTGTTGTTGGTCCAACTTTACTGCGTCCAATACTGCCTAAAGGCTT
                                     gcttgat  putative branch site (score: 5)
       ttatttgtatt  TA-rich tract