1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacattacaccaacataaatgttgatgatctgtgttagtaaccaagtatgtaagcttattgggtttttgttgttatgtggttgcagATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCTTTGTCTAGTAATATGATAAGGTTTTTCAAGAACAGTGATGACACGTGGA
species | Arabidopsis thaliana |
transcript | AT4G14040.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGACCTTGGAAATACCGGTCTCTTACCTCTTGAG ATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCTEST: gi|124990805|gb|EL063074.1|EL063074
genomic: TTGACCTTGGAAATACCGGTCTCTTACCTCTTGAGgtaacattac ... gtggttgcagATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT
EST: AGATAATTGACCTTGGAAATACCGGTCTCTTACCTTCTTGAG ATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCEST: gi|125266956|gb|EL281041.1|EL281041
genomic: AGATAATTGACCTTGGAAATACCGGTCTCTTACC-TCTTGAGgtaacattac ... gtggttgcagATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGC
EST: ATAATTGACCTTGGAAATACCGGTCTCTTACCTCTTGAG ATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCTEST: gi|125212121|gb|EL227075.1|EL227075
genomic: ATAATTGACCTTGGAAATACCGGTCTCTTACCTCTTGAGgtaacattac ... gtggttgcagATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT
EST: AAATGAAACAGATAATTGACCTTGGAAATACCGGTCTCTTACCTCTTGAG ATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCTEST: gi|124718193|gb|EH809595.1|EH809595
genomic: AAATGAAACAGATAATTGACCTTGGAAATACCGGTCTCTTACCTCTTGAGgtaacattac ... gtggttgcagATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT
EST: AGATAATTGACCTTGGAAATACCGGTCTCTTACCTCTTGAG ATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCTEST: gi|124912772|gb|EH986760.1|EH986760
genomic: AGATAATTGACCTTGGAAATACCGGTCTCTTACCTCTTGAGgtaacattac ... gtggttgcagATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT
EST: CTTACCTCTTGAG ATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT
genomic: CTTACCTCTTGAGgtaacattac ... gtggttgcagATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCT
gtgttagtaaccaagtatgtaagcttattgggtttttgttgttatgtggttgcagATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCTTTGTCTAGTAATATGATAAGGTTTTTCAAGAACAGTGATGACACGTGGA
tagtaac putative branch site (score: 1)
tttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacattacaccaacataaatgttgatgatctgtgttagtaaccaagtatgtaagcttattgggtttttgttgttatgtggttgcagATCAGATTCTTGCATGATCCTTCTAAAGATACAGGGTATGTTGGGAGTGCTTTGTCTAGTAATATGATAAGGTTTTTCAAGAACAGTGATGACACGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC