1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatcttattgcaaaacaaagcattttctgttttagtttcttgtcgctattagtcatatatcattgttggttattgtatcagGTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCAACCTCGGCACAAGACCATGATCAGCACATCTTGGGGAGCACCTAAAGCC
species | Arabidopsis thaliana |
transcript | AT4G14030.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTTTAACATCAAGAATAG GTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCAEST: gi|86040919|gb|DR336674.1|DR336674
genomic: AAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTTTAACATCAAGAATAGgtatcttatt ... attgtatcagGTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCA
EST: AAGGGGAATGGGTTTCTTCTTCTTGATTCTGATTTTAACATCAAGAATAG GTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCAEST: gi|125241683|gb|EL255768.1|EL255768
genomic: AAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTTTAACATCAAGAATAGgtatcttatt ... attgtatcagGTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCA
EST: CTGATTTTAACATCAAGAATAG GTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCAEST: gi|47831973|gb|CK121657.1|CK121657
genomic: CTGATTTTAACATCAAGAATAGgtatcttatt ... attgtatcagGTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCA
EST: AAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTTTAACATCAAGAATAG GTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCA
genomic: AAGGGGAATGGGTTTCTTCTTCTTGACTCTGATTTTAACATCAAGAATAGgtatcttatt ... attgtatcagGTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCA
ctgttttagtttcttgtcgctattagtcatatatcattgttggttattgtatcagGTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCAACCTCGGCACAAGACCATGATCAGCACATCTTGGGGAGCACCTAAAGCC
tattagtcatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcttattgcaaaacaaagcattttctgttttagtttcttgtcgctattagtcatatatcattgttggttattgtatcagGTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCAACCTCGGCACAAGACCATGATCAGCACATCTTGGGGAGCACCTAAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA