Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctgtatccactatgcctatctctttccgttgtgtctgcgttaacgtagtttcctgaaaacgaaaaccgtgttatgcagCGCAGTGCTAGCACATTTTATTTTGGAAGAGAAGTTGCATATGTTTGGTATACTTGGTTGTGTCCTCTGTGTTGTTGGATCTACAACGATTGTTTTACAT

Basic information

species Arabidopsis thaliana
transcript AT4G13800.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G13800.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os04g30450.1 (Oryza sativa), 3'ss of exon 3
---gtatctgtatccactatgcctat---ctctttccgttgtgtctgcgttaacgtagtttcctgaaaacgaaaaccgtgttatgcagCGCAGTGCTAGCACATTTTATTTTGGAAGAGAAGTTGCATATGTTTGGTATACTTGGTTGTGTCCTCTGTGTTGTTGGATCTACAACGATTGTTTTACAT
    ||    ||||   |  | |||     |  ||  | |   || |   ||  || ||||||| || ||          | || ||| |||||||||||||| ||||||||| | |||| ||||||||||||||||||  |||||||  |  | || |||||||| ||       || ||| |||||
gttttacacatatct-ttgcgtctaggaaataattttgattaatcagtagta-tgttgtttccttaacactct--tttattcattcagTGCAGTGCTAGCACACTTTATTTTGAAGGAGAGGTTGCATATGTTTGGTATTGTTGGTTGCATATTATGCGTTGTTGGTTCAGTTGGTATAGTTCTACAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccgttgtgtctgcgttaacgtagtttcctgaaaacgaaaaccgtgttatgcagCGCAGTGCTAGCACATTTTATTTTGGAAGAGAAGTTGCATATGTTTGGTATACTTGGTTGTGTCCTCTGTGTTGTTGGATCTACAACGATTGTTTTACAT
              cgttaac  putative branch site (score: 3)