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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttatgtaatctggatgataattcttccttttttcatgttccgttattgttttctgtttaaaattaacctggtttctatatatttttgtggctagttagTCAGAAGTAACAAGGAAAATGGATAAATCAAAGGGCGGTGATAGTAATGATCCAAAAATCGAAAGCCCTGGTGCCCTTTCAAGGTCAGAGATTACTCATG

Basic information

species Arabidopsis thaliana
transcript AT4G13730.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076731|gb|DR372488.1|DR372488
EST:     AGAAAAGGTCTCAGTACAAGCAATTCAAAGAGGAGCTTCTGATGAACCCT                         TCAGAAGTAACAAGGAAAATGGATAAATCAAAGGGCGGTGATAGTAATGAT
genomic: AGAAAAGGTCTCAGTACAAGCAATTCAAAGAGGAGCTTCTGATGAACCCTgtaagtccgt ... ggctagttagTCAGAAGTAACAAGGAAAATGGATAAATCAAAGGGCGGTGATAGTAATGAT
EST: gi|125299231|gb|EL313316.1|EL313316
EST:     AGAAAAGGTCTCAGTACAAGCAATTCAAAGAGGAGCTTCTGATGAACCCT                         TCAGAAGTAACAAGGAAAATGGATAAATCAAAGGGCGGTGATAGTAA
genomic: AGAAAAGGTCTCAGTACAAGCAATTCAAAGAGGAGCTTCTGATGAACCCTgtaagtccgt ... ggctagttagTCAGAAGTAACAAGGAAAATGGATAAATCAAAGGGCGGTGATAGTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgttttctgtttaaaattaacctggtttctatatatttttgtggctagttagTCAGAAGTAACAAGGAAAATGGATAAATCAAAGGGCGGTGATAGTAATGATCCAAAAATCGAAAGCCCTGGTGCCCTTTCAAGGTCAGAGATTACTCATG
                 aattaac  putative branch site (score: 2)
     ttttctgtttaaaatt  TA-rich tract