1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtatttcgtatttctgctagacgtatttgtgtgtagacatcgagttatggataccaaatctgtttacttggagaatttgtagaactaggtcactgaaactgatgtttggagtttttgattctaacagGAACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAGAAGCAACTCAACAAGCTCAGGACCAAGGCAGAGAAGGTTGCGGAAGAGA
species | Arabidopsis thaliana |
transcript | AT4G13170.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGACGTTTATCTTCTGAGGTTGGCTGGAACCATTATGATACCATTAAA GAACTTGAGACAAAGAGAAAGGAAAGATCACAAGTEST: gi|125316284|gb|EL330369.1|EL330369
genomic: TGGGACGTTTATCTTCTGAGGTTGGCTGGAACCATTATGATACCATTAAAgtgagtattt ... attctaacagGAACTTGAGACAAAGAGAAAGGAAAGATCACAAGT
EST: TGGGACGTTTATCTTCTGAGGTTGGCTGGAACCATTATGATACCATTAAA GAACTTGAGACAAAGAGAAAGGAAAGATCACAEST: gi|125303358|gb|EL317443.1|EL317443
genomic: TGGGACGTTTATCTTCTGAGGTTGGCTGGAACCATTATGATACCATTAAAgtgagtattt ... attctaacagGAACTTGAGACAAAGAGAAAGGAAAGATCACA
EST: CTTCTGAGGTTGGCTGGAACCATTATGATACCATTAAA GAACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAGEST: gi|125207287|gb|EL222241.1|EL222241
genomic: CTTCTGAGGTTGGCTGGAACCATTATGATACCATTAAAgtgagtattt ... attctaacagGAACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAG
EST: ATACCATTAAA GAACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAGEST: gi|125269397|gb|EL283482.1|EL283482
genomic: ATACCATTAAAgtgagtattt ... attctaacagGAACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAG
EST: ATGATACCATTAAA GAACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAGEST: gi|124776175|gb|EH866302.1|EH866302
genomic: ATGATACCATTAAAgtgagtattt ... attctaacagGAACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAG
EST: TGGGACGTTTATCTTCTGAGGTTGGCTGGAACCATTATGATACCATTAAA GAACTTGAGACAAAGAGAA-GGAAAGATCACAAGTEST: gi|124721224|gb|EH812626.1|EH812626
genomic: TGGGACGTTTATCTTCTGAGGTTGGCTGGAACCATTATGATACCATTAAAgtgagtattt ... attctaacagGAACTTGAGACAAAGAGAAAGGAAAGATCACAAGT
EST: TGAGGTTGGCTGGAACCATTATGATACCATTAAA GAACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAGEST: gi|125008408|gb|EL080677.1|EL080677
genomic: TGAGGTTGGCTGGAACCATTATGATACCATTAAAgtgagtattt ... attctaacagGAACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAG
EST: TGGGACGTTTACCTTCTGAGGTTGGCTGGAACCATTATGATACCATTAAA GAACTTGAGACAAAGAGAAAGGAAAGAEST: gi|125258886|gb|EL272971.1|EL272971
genomic: TGGGACGTTTATCTTCTGAGGTTGGCTGGAACCATTATGATACCATTAAAgtgagtattt ... attctaacagGAACTTGAGACAAAGAGAAAGGAAAGA
EST: TGGGACGTTTATCTTCTGAGGTTGGCTGGAACCATTATGATACCATTAAA GAACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAG
genomic: TGGGACGTTTATCTTCTGAGGTTGGCTGGAACCATTATGATACCATTAAAgtgagtattt ... attctaacagGAACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAG
gaatttgtagaactaggtcactgaaactgatgtttggagtttttgattctaacagGAACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAGAAGCAACTCAACAAGCTCAGGACCAAGGCAGAGAAGGTTGCGGAAGAGA
tttttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatttcgtatttctgctagacgtatttgtgtgtagacatcgagttatggataccaaatctgtttacttggagaatttgtagaactaggtcactgaaactgatgtttggagtttttgattctaacagGAACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAGAAGCAACTCAACAAGCTCAGGACCAAGGCAGAGAAGGTTGCGGAAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA