1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaagttgttgaaagtttctctctttcgcttatcttctagtgtgtagctgattctatctcaccttgtgttttcctcagGTTGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTGAATCTGCGAGAAGTTAAG
species | Arabidopsis thaliana |
transcript | AT4G13020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTGGAAACATATGAAGTT GTTGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTGEST: gi|116381092|gb|EG423684.1|EG423684
genomic: TTTGGAAACATATGAAGTTgtaagttgtt ... ttttcctcagGTTGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTG
EST: GTACTTGTGGTAGTGTATATAAAGCAGTAAATTTGGAAACATATGAAGTT GTTGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTGEST: gi|116427860|gb|EG470452.1|EG470452
genomic: GTACTTGTGGTAGTGTATATAAAGCAGTAAATTTGGAAACATATGAAGTTgtaagttgtt ... ttttcctcagGTTGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTG
EST: GTACTTGTGGTAGTGTATATAAAGCAGTAAATTTGGAAACATATGAAGTT GTTGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTG
genomic: GTACTTGTGGTAGTGTATATAAAGCAGTAAATTTGGAAACATATGAAGTTgtaagttgtt ... ttttcctcagGTTGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTG
tttcgcttatcttctagtgtgtagctgattctatctcaccttgtgttttcctcagGTTGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTGAATCTGCGAGAAGTTAAG
atctcac putative branch site (score: 3)
ccttgtgttttcctc CT-rich tract
ttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgttgaaagtttctctctttcgcttatcttctagtgtgtagctgattctatctcaccttgtgttttcctcagGTTGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTGAATCTGCGAGAAGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT