Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtctatatacaaaaatataaaaatatacacacatttatatatatatacatatatatatataaattataattatataaccttataaccaatttttttttttgtaattgcagCTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC

Basic information

species Arabidopsis thaliana
transcript AT4G12890.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164077520|gb|ES026946.1|ES026946
EST:     ATTGTTACAATGGCGATCTCTCTAAAAAG                         CTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAA
genomic: ATTGTTACAATGGTGATCTCTCTCAAAAGgtaggtctat ... gtaattgcagCTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAA
EST: gi|164161621|gb|ES032949.1|ES032949
EST:     TGTTACAATGGCGATCTCTCTAAAAAG                         CTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAA
genomic: TGTTACAATGGTGATCTCTCTCAAAAGgtaggtctat ... gtaattgcagCTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAA
EST: gi|86079855|gb|DR375612.1|DR375612
EST:     GACGTGAGAAAGCCATCAGTGATTGTTACAATGGCGATCTCTCTAAAAAG                         CTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAA
genomic: GACGTGAGAAAGCCATCAATGATTGTTACAATGGTGATCTCTCTCAAAAGgtaggtctat ... gtaattgcagCTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAA
EST: gi|164179628|gb|ES205700.1|ES205700
EST:     ATCTCTCTAAAAAG                         CTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAA
genomic: ATCTCTCTCAAAAGgtaggtctat ... gtaattgcagCTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAA
EST: gi|164076979|gb|ES184298.1|ES184298
EST:     TCTCT-AAAAG                         CTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAA
genomic: TCTCTCAAAAGgtaggtctat ... gtaattgcagCTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAA
EST: gi|164133989|gb|ES128307.1|ES128307
EST:     GATCTCTCTAAAAAAG                         CTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGA
genomic: GATCTCTCT-CAAAAGgtaggtctat ... gtaattgcagCTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGA
EST: gi|164202258|gb|ES031798.1|ES031798
EST:     GATCTCTCTAAAAAG                         CTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAA
genomic: GATCTCTCTCAAAAGgtaggtctat ... gtaattgcagCTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatataaattataattatataaccttataaccaatttttttttttgtaattgcagCTGATACTTGGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAATACGTACCATGGGTCACACTCAACGGCAAACCACTCTATGAC
                        ttataac  putative branch site (score: 2)
                                  tttttttttttgt  putative PPT
     aaattataattatata  TA-rich tract