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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttagctaaacgtttcaatcatttttatcacgctaaatattctccctcttcatacagtcacctttcacatttcttcctaccaaaattgaccaaattacctgctatttagaattcagtaattggtggaataactcttttgtttaaactgattgacagGATGAGAAATTTCTCTGGCCAGATGCTGCTGTTCCTCAAGTGTGTGCTCTTGAGAATGCTTCACATGCTTCTCTTGCATCGGATTTTCAGAAATATAACC

Basic information

species Arabidopsis thaliana
transcript AT4G11560.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063480|gb|DR359237.1|DR359237
EST:     GATCTCATCTTGAACAGGATGAGAAAGACACAAAGCCGGAAAATGGAAAG                         GATGAGAAATTTCTCTGGCCAGATGCTGCTGTTCCTCAAGTGTGTGCTCTT
genomic: CATCTCATCTTGAACAGGATGAGAAAGACACAAAGCCGGAAAATGGAAAGgtcttagcta ... tgattgacagGATGAGAAATTTCTCTGGCCAGATGCTGCTGTTCCTCAAGTGTGTGCTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatttagaattcagtaattggtggaataactcttttgtttaaactgattgacagGATGAGAAATTTCTCTGGCCAGATGCTGCTGTTCCTCAAGTGTGTGCTCTTGAGAATGCTTCACATGCTTCTCTTGCATCGGATTTTCAGAAATATAACC
                                 ttttgtttaaa  TA-rich tract