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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatgacctaattgactgtattccattattgtgtagcgatgtttgattctgtatgttattgtatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAGACCTATGTGATATTCGGTGAGGCTAAGATTGATGACATGAGCTCTCAGC

Basic information

species Arabidopsis thaliana
transcript AT4G10480.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G10480.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G171466_T01 (Zea mays), 3'ss of exon 2
------------------------------------------------------------------------------------------------------gtaagta-atgacctaattgactgtattccattattgtgtagcgatgtt-tgattctgtatgt---tattgtatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAGACCTATGTGATATTCGGTGAGGCTAAGATTGATGACATGAGCTCTCAGC
                                                                                                      |||  || ||| ||        | || |    | |||  |    || ||    |  ||  |||   | |    || || || |  |||| ||  | ||||||||||| || |||||||| ||||  || ||||| || ||||||||||| ||||| ||||| || ||| ||||||| ||||
gtacgtatatctatatatatatgccaattattgccacaaggaaggaacacgatagatagctaactttttatgctccgtgtatacaattttacaaacaagatagtagatagatgcccgtgcaatttttagttagctcttgccttctcatattactgtcatgcgtgtctgtctcccttccttcagATACTGTTCGTGGTGTCGAAGCCGGACGTCTTCAAGAGCCCGACGTCGGAGACGTACGTGATATTCGGCGAGGCCAAGATAGAGGACCTGAGCTCACAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124788964|gb|EH878643.1|EH878643
EST:     TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAAT                         GTGTTGTTTGTCATCTCGAAGCCGGATG
genomic: TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAATgtaagtaatg ... tatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATG
EST: gi|125301050|gb|EL315135.1|EL315135
EST:     TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAAT                         GTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAAC
genomic: TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAATgtaagtaatg ... tatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAAC
EST: gi|164048330|gb|ES215676.1|ES215676
EST:     CTATCAAGAGATCAAAGAATT                         GTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGA
genomic: CTATCAAGAGATCAAAGAA-Tgtaagtaatg ... tatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGA
EST: gi|86075631|gb|DR371388.1|DR371388
EST:     GAGATCAAAGAAT                         GTGTTGTTTGTCATCTCGAASCCGGATGTGTTCAAGAGTCCGAACTCTGAG
genomic: GAGATCAAAGAATgtaagtaatg ... tatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAG
EST: gi|116479994|gb|EG522586.1|EG522586
EST:     TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAAT                         GTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAG
genomic: TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAATgtaagtaatg ... tatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAG
EST: gi|86078942|gb|DR374699.1|DR374699
EST:     TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAAT                         GTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAG
genomic: TGAAACCTGTTACTGATGTTAGCAGAGTGACTATCAAGAGATCAAAGAATgtaagtaatg ... tatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAG
EST: gi|125001938|gb|EL074207.1|EL074207
EST:     AGTGACTATCAAGAGATCAAAGAAT                         GTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAG
genomic: AGTGACTATCAAGAGATCAAAGAATgtaagtaatg ... tatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtattccattattgtgtagcgatgtttgattctgtatgttattgtatcatttagGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAACTCTGAGACCTATGTGATATTCGGTGAGGCTAAGATTGATGACATGAGCTCTCAGC
                        gtttgat  putative branch site (score: 5)
                                       ttattgtatcattta  TA-rich tract