1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagccagaggctataaccccttctgaaactatattattgtgtttttcttctttgtgagtctttaacggtttatttttctctgaagacagAATTGTTCATTGGTCATCCTCAATCATGAAGATATATACGCGAGCATGGAGAGACCTGCATTTTTGCTACAGATGGTATGCCTTGCAGATGTTGTGATAA
species | Arabidopsis thaliana |
transcript | AT4G10090.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCACGTATTGGACTTCTTGCATTATTGCCACACATTAAGTTCTGAAAGC AATTGTTCATTGGTCATCCTCAATCATGAAGATATATACGCGAGCATGGAGEST: gi|19874952|gb|AU235783.1|AU235783
genomic: ATCACGTATTGGACTTCTTGCATTATTGCCACACATTAAGTTCTGAAAGCgtaagccaga ... ctgaagacagAATTGTTCATTGGTCATCCTCAATCATGAAGATATATACGCGAGCATGGAG
EST: ATCACGTATTGGACTTCTTGCATTATTGNCACACATTAAGTTCTGAAAGC AATTGT-CATTGGNCATCCTCAATCNTGAA
genomic: ATCACGTATTGGACTTCTTGCATTATTGCCACACATTAAGTTCTGAAAGCgtaagccaga ... ctgaagacagAATTGTTCATTGGTCATCCTCAATCATGAA
tattgtgtttttcttctttgtgagtctttaacggtttatttttctctgaagacagAATTGTTCATTGGTCATCCTCAATCATGAAGATATATACGCGAGCATGGAGAGACCTGCATTTTTGCTACAGATGGTATGCCTTGCAGATGTTGTGATAA
ctttaac putative branch site (score: 3)
tttatttttctct putative PPT
tttatttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccagaggctataaccccttctgaaactatattattgtgtttttcttctttgtgagtctttaacggtttatttttctctgaagacagAATTGTTCATTGGTCATCCTCAATCATGAAGATATATACGCGAGCATGGAGAGACCTGCATTTTTGCTACAGATGGTATGCCTTGCAGATGTTGTGATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG