Sequence
atgc intronic sequence ATGC exonic sequencegtaacggttttgcttaatgtcttatacatgtttttgaagagaatcttgaaagaatctatacttgtctacaggtataatgtttcagtcagCAATTGTAGTATTGGTGATTTATGTGTCATCCATAATGGAGTCTGCATTGGTCAAGATG
Basic information
species | Arabidopsis thaliana |
transcript | AT4G05210.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G05210.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA01G45150.1 (Glycine max), 3'ss of exon 2
-------------------------------gtaacggttt-tgcttaatgtcttatac-atgtttttgaagagaatcttgaaagaatctatacttgtctacaggtataatgtttcagtcagCAATTGTAGTATTGGTGATTTATGTGTCATCCATAATGGAGTCTGCATTGGTCAAGATG
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tgtgcatgcttatgtccaaacacttatttgagttatgtctgatgcaaaataatttgtactgtactactgatgtgg-ttttgatacta-ctatacttttc--cagGTATAATGTTGCACTTAGTAATTGCTGTATAGGTGATTCATGTGTAATCCACAATGGAGTCTGCATTGGTCAAGATG
upper sequence: AT4G05210.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA11G00520.1 (Glycine max), 3'ss of exon 3
--------------gtaacggttttgctta-atgtcttataca-tgtttttgaagagaatcttgaaagaatct--atact------tgtctacaggtataatgtttcagtcagCAATTGTAGTATTGGTGATTTATGTGTCATCCATAATGGAGTCTGCATTGGTCAAGATG
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gtaaatcatctaatcaaatcatttcgcttacatttcttataaaataatttgtattatactactgatatggtcttgatactactacacttttccagGTATAATGTCGCACTTAGTAATTTCTGTATAGGTGATTCATGTGTAATCCACAATGGAGTCTGCATTGGTCAAGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaagagaatcttgaaagaatctatacttgtctacaggtataatgtttcagtcagCAATTGTAGTATTGGTGATTTATGTGTCATCCATAATGGAGTCTGCATTGGTCAAGATG
tataatgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacggttttgcttaatgtcttatacatgtttttgaagagaatcttgaaagaatctatacttgtctacaggtataatgtttcagtcagCAATTGTAGTATTGGTGATTTATGTGTCATCCATAATGGAGTCTGCATTGGTCAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG