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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaccctaattctaatttccattcattagcttgattttagtaattctatagacttgactgatgatcttatcttgacagGTTGTGGAAGATTTTGCTTTAGAGAATGTGGTGTATCTTGAGTTACGAACTACTCCAAAG

Basic information

species Arabidopsis thaliana
transcript AT4G04880.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G04880.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA07G38880.1 (Glycine max), 3'ss of exon 3
-------------gtaaaaccctaattcta--atttccattc-attagcttgattttagtaattctatagacttgactgatgatcttatcttgacagGTTGTGGAAGATTTTGCTTTAGAGAATGTGGTGTATCTTGAGTTACGAACTACTCCAAAG
              |    ||||    |||  |||| ||||   |||     | |||| |   | |  |   ||     |  | ||| |  |  |||||||| ||||||||||| || |||||||| |||||||| ||| |  | ||||| ||||||
gtatgttattgtcttcttgccctgtgcctaccatttgcattttgttattacaaatttattgcctttgca--tttatgcaagcaacttctactagcagGTTGTTGAAGATTTTGCATTTGAGAATGTTGTGTATCTGGAGCTGAGGACTACACCAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattagcttgattttagtaattctatagacttgactgatgatcttatcttgacagGTTGTGGAAGATTTTGCTTTAGAGAATGTGGTGTATCTTGAGTTACGAACTACTCCAAAG
                                gactgat  putative branch site (score: 3)
                                         tcttatctt  putative PPT
          attttagtaattctat  TA-rich tract