Sequence
atgc intronic sequence ATGC exonic sequencegtaaataaaatcttgaattagactatgattggaataaatcattttcacctttttaactgatttggtttctctattgtgtatatatttagTGACCTATCTAGAGAACAACAGAGCAGGGATCACTGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCATCGAACTTGCTCTTCT
Basic information
species | Arabidopsis thaliana |
transcript | AT4G03820.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G03820.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os06g42850.1 (Oryza sativa), 3'ss of exon 2
gtaaataaaatcttgaattagacta---tgattggaataaatc-------attttcacctttt---taactgatttggtttctctattgtgtatatatttagTGACCTATCTAGAGAACAACAGAGCAGGGATCACTGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCATCGAACTTGCTCTTCT
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-attgtacattgttgcatcagcctaaacttttttggatgaatttatcggtgtatgcaacttgacaataatgaaataaaatgttcactcatgtttg-gtgcagTGACCTATCTGGAGAACAACAGAGCGGGGATCACGGTGTTCGGGTTCACGCTGGACAGGTCCTACCTGCACACGATATTCATGCTCGAGTGGACGCTCTT
upper sequence: AT4G03820.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv00s0399g00030.t01 (Vitis vinifera), 3'ss of exon 3
gtaaataaaatcttgaattagactatgattggaataaatcattttcacctttttaactgatttggtttctctattgtgt---atatatt-tagTGACCTATCTAGAGAACAACAGAGCAGGGATCACTGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCATCGAACTTGCTCTTCT
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-------gtgagtggaatcaaactactaatttgttaag-cagtttggtactatgatatatagtaatcatcaaatggggttgaatgtcctgcagTCACATATCTAGAGAACAACAGAGCAGGGATTACAGTTTTCGGGTTCATGCTGGACAGGACATGGCTGCACACCATTTTTGGGGTTGAGATGTCTCTTGT
upper sequence: AT4G03820.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv10s0523g00050.t01 (Vitis vinifera), 3'ss of exon 3
gtaaataaaatcttgaattagactatgattggaataaatcattttcacctttttaactgatttggtttctctattgtgt---atatatt-tagTGACCTATCTAGAGAACAACAGAGCAGGGATCACTGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCATCGAACTTGCTCTTCT
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-------gtgagtggaatcaaactactaatttgttaag-cagtttggtactatgatatatagtaatcatcaaatggggttgaatgtcctgcagTCACATATCTAGAGAACAACAGAGCAGGGATTACAGTTTTCGGGTTCATGCTGGACAGGACATGGCTGCACACCATTTTTGGGGTCGAGATGTCTCTTGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19797121|gb|AU229094.1|AU229094EST: TCTTTGCCCGCGCCATTTCTTCTCAGAAACGTCAAGCTCTAG TGACCTATCTAGAGAACAACAGAGCAGGGATCACTGTTTACGGATTCTT-G
genomic: TCTTTGCCCGCGCCATTTCTTCTCAGAAACGTCAAGCTCTAGgtaaataaaa ... atatatttagTGACCTATCTAGAGAACAACAGAGCAGGGATCACTGTTTACGGATTCTTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaatcattttcacctttttaactgatttggtttctctattgtgtatatatttagTGACCTATCTAGAGAACAACAGAGCAGGGATCACTGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCATCGAACTTGCTCTTCT
tattgtgtatatattt TA-rich tract