1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataactttcttaacttctatttctgtagaatttgtataaattacccatctagtcttctaagttaattgatttttcttttcttttggttttgtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT
species | Arabidopsis thaliana |
transcript | AT4G02620.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018455|gb|DR314201.1|DR314201
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|164080072|gb|ES059831.1|ES059831
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|164025326|gb|ES107382.1|ES107382
genomic: TAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TAAGGAGGAAGACAAATTACCTCATCGTGGTATTCAA AGACAACTGTGAGACAAATTGAGGATGCTT-CAAGGAATTCTCAGCAAGGEST: gi|86018467|gb|DR314213.1|DR314213
genomic: TAAGGAGGAAGACAAATTACCTCATCGTGG-ATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|124784773|gb|EH874480.1|EH874480
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: GTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTEST: gi|86018442|gb|DR314188.1|DR314188
genomic: GTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATT
EST: TGGTMATGTTGACATMAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018460|gb|DR314206.1|DR314206
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018443|gb|DR314189.1|DR314189
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018454|gb|DR314200.1|DR314200
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018463|gb|DR314209.1|DR314209
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018451|gb|DR314197.1|DR314197
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|125127352|gb|EL172240.1|EL172240
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGEST: gi|125257635|gb|EL271720.1|EL271720
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGG
EST: CAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAACGGEST: gi|125113717|gb|EL164434.1|EL164434
genomic: CAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAA-GG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAEST: gi|86018447|gb|DR314193.1|DR314193
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAA
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018456|gb|DR314202.1|DR314202
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018466|gb|DR314212.1|DR314212
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|125041829|gb|EL114098.1|EL114098
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTACTCAGCAAGGEST: gi|124852176|gb|EH936613.1|EH936613
genomic: TAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATT-CTCAGCAAGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGEST: gi|86018458|gb|DR314204.1|DR314204
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|125112834|gb|EL163874.1|EL163874
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: CAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018457|gb|DR314203.1|DR314203
genomic: CAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018461|gb|DR314207.1|DR314207
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|124793610|gb|EH883289.1|EH883289
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGEST: gi|125009321|gb|EL081590.1|EL081590
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018462|gb|DR314208.1|DR314208
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018450|gb|DR314196.1|DR314196
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018444|gb|DR314190.1|DR314190
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGG-ATACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|125016349|gb|EL088618.1|EL088618
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: AGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018453|gb|DR314199.1|DR314199
genomic: AGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86075878|gb|DR371635.1|DR371635
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|164062852|gb|ES117891.1|ES117891
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGEST: gi|124998995|gb|EL071264.1|EL071264
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTG
EST: CGTGGATTCAA AGACAGCTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018449|gb|DR314195.1|DR314195
genomic: CGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018464|gb|DR314210.1|DR314210
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|124860290|gb|EH944727.1|EH944727
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: ATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018452|gb|DR314198.1|DR314198
genomic: ATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018459|gb|DR314205.1|DR314205
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|124897637|gb|EH973851.1|EH973851
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: ACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018448|gb|DR314194.1|DR314194
genomic: ACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|47828671|gb|CK118355.1|CK118355
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|86018445|gb|DR314191.1|DR314191
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGEST: gi|125197817|gb|EL212771.1|EL212771
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAAEST: gi|86018465|gb|DR314211.1|DR314211
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAA
EST: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAA AGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
genomic: TGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAgtatgttttt ... gtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGG
catctagtcttctaagttaattgatttttcttttcttttggttttgtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT
aattgat putative branch site (score: 4)
tttttcttttcttttg CT-rich tract
taagttaattgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataactttcttaacttctatttctgtagaatttgtataaattacccatctagtcttctaagttaattgatttttcttttcttttggttttgtcttttcagAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - acccatc