1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttttttatgttaaaaaagcatctcccagtttgatgctttttggagtatatcaccatgattccttgcatttgcactaagataggtcttaatatgtttgcagCACCTCTAGTGGCTTCTTCACCTCATAAAGCACCATCACAAGGATCCTCAGCAACTACGTCAGTAAGATCTCCAGGGAAAAAGAGGCATCCCAATCTTAT
species | Arabidopsis thaliana |
transcript | AT4G02010.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
tatatcaccatgattccttgcatttgcactaagataggtcttaatatgtttgcagCACCTCTAGTGGCTTCTTCACCTCATAAAGCACCATCACAAGGATCCTCAGCAACTACGTCAGTAAGATCTCCAGGGAAAAAGAGGCATCCCAATCTTAT
tcttaat putative branch site (score: 3)
ttaatatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttatgttaaaaaagcatctcccagtttgatgctttttggagtatatcaccatgattccttgcatttgcactaagataggtcttaatatgtttgcagCACCTCTAGTGGCTTCTTCACCTCATAAAGCACCATCACAAGGATCCTCAGCAACTACGTCAGTAAGATCTCCAGGGAAAAAGAGGCATCCCAATCTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - taaaaaa
- - - - - - - - - catctcc
- - - - - - - - - - - - - agtttga
- - - - - - - - - - - - - - - - - - tttttgg
- - - - - - - - - - - - - - - - - - - - - - - - atcacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaga